BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1566.p         (57 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BMEI1101 [R] COG3313 Predicted Fe-S protein Bme Brucella melitensis    45   4e-05
VC1662 [R] COG3313 Predicted Fe-S protein Vch Vibrio cholerae          40   0.001
mlr0564 [R] COG3313 Predicted Fe-S protein Mlo Mesorhizobium loti      40   0.001
VCA0314 [R] COG3313 Predicted Fe-S protein Vch Vibrio cholerae         40   0.001
PA3752 [R] COG3313 Predicted Fe-S protein Pae Pseudomonas aerugi...    40   0.002

>BMEI1101 [R] COG3313 Predicted Fe-S protein Bme Brucella melitensis
          Length = 76

 Score = 45.1 bits (105), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 30/55 (54%), Gaps = 2/55 (3%)

Query: 5  VKSPCVSLCKL--KHDICTGCGRTLEEIKDWKSMKRKQQLHTVELAARRMKALKK 57
          ++SPC+ +C +  K   C GC RTL+EI  W SM   +Q   + L   R K L +
Sbjct: 18 IESPCILVCTMDAKTGFCLGCARTLDEIAQWSSMNSGEQRAVLALLPARHKVLDR 72


>VC1662 [R] COG3313 Predicted Fe-S protein Vch Vibrio cholerae
          Length = 88

 Score = 40.4 bits (93), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 30/51 (58%), Gaps = 1/51 (1%)

Query: 4  DVKSPCVSLCKL-KHDICTGCGRTLEEIKDWKSMKRKQQLHTVELAARRMK 53
          ++ SPC+ +C + +   C GC R  EE  +W SM   QQLH ++L  +R +
Sbjct: 8  NIVSPCIGVCSVDEKGYCKGCLRKREERFEWLSMTPAQQLHVIKLCRQRYR 58


>mlr0564 [R] COG3313 Predicted Fe-S protein Mlo Mesorhizobium loti
          Length = 76

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 29/49 (59%), Gaps = 3/49 (6%)

Query: 5  VKSPCVSLCK--LKHDICTGCGRTLEEIKDWKSMKRKQQLHTV-ELAAR 50
          ++SPC+ +C   +K   C GCGRT EEI  W  M  + + + + EL AR
Sbjct: 4  IESPCILVCSIDMKTGFCFGCGRTREEIGAWMGMTPETRRNVMAELPAR 52


>VCA0314 [R] COG3313 Predicted Fe-S protein Vch Vibrio cholerae
          Length = 93

 Score = 40.0 bits (92), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 24/46 (52%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 6  KSPCVSLCKLKH-DICTGCGRTLEEIKDWKSM--KRKQQLHTVELA 48
          KSPCV  C L   DIC GCGRTL+EI  W S     KQ++    LA
Sbjct: 39 KSPCVRHCCLDDKDICIGCGRTLDEICRWSSATNSEKQEILINSLA 84


>PA3752 [R] COG3313 Predicted Fe-S protein Pae Pseudomonas aeruginosa
          Length = 64

 Score = 39.7 bits (91), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 3  KDVKSPCVSLCKL-KHDICTGCGRTLEEIKDWKSMKRKQQLHTVELAARRMKA 54
          + V SPCV +C L + DIC GC RT  EI  W  M   ++   +     R KA
Sbjct: 4  RPVASPCVHVCALDEQDICIGCQRTAAEITRWGLMSNDERREVLGRCFERAKA 56