BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1558.p         (94 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp1049 Non COG                                                        31   0.76 
PA1467 [K] COG2378 Predicted transcriptional regulator Pae Pseud...    30   0.98 
BS_ydbG [KT] COG4565 Response regulator of citrate/malate metabo...    30   0.99 
mll0250 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium ...    30   1.5  
BS_yufM [KT] COG4565 Response regulator of citrate/malate metabo...    29   2.2  

>RSp1049 Non COG
          Length = 82

 Score = 30.8 bits (68), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 16/43 (37%), Positives = 27/43 (62%)

Query: 39 QEKEGAALSLARLSKRTQLRMSTLRRFLSALEEAGVVKVEMNE 81
          + + G  +SL  L+KR   R ST+ R L  L +AG+++V M++
Sbjct: 20 ETEAGRPVSLPWLTKRVGERGSTVLRALHPLADAGLLRVTMDD 62


>PA1467 [K] COG2378 Predicted transcriptional regulator Pae Pseudomonas
          aeruginosa
          Length = 323

 Score = 30.4 bits (67), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 21/58 (36%), Positives = 33/58 (56%), Gaps = 7/58 (12%)

Query: 27 VLLIVETLQADAQEKEGAALSLARLSKRTQLRMSTLRRFLSALEEAGV-VKVEMNEDG 83
          VL ++E LQ+  Q      LS + L++R ++   TLRR++ ALEE G+ +  E    G
Sbjct: 8  VLALLELLQSHGQ------LSGSELARRLEVDGRTLRRYIVALEELGIPISAERGRHG 59


>BS_ydbG [KT] COG4565 Response regulator of citrate/malate metabolism Bsu
           Bacillus subtilis
          Length = 226

 Score = 30.4 bits (67), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 25/42 (59%)

Query: 44  AALSLARLSKRTQLRMSTLRRFLSALEEAGVVKVEMNEDGTG 85
           A+LS   ++K   +   T RR+L  LE+ G++K+++   G G
Sbjct: 175 ASLSAEEVAKALGIARVTARRYLDYLEKTGIIKLDVQYGGVG 216


>mll0250 [K] COG1414 Transcriptional regulator Mlo Mesorhizobium loti
          Length = 273

 Score = 30.0 bits (66), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 15/40 (37%), Positives = 26/40 (65%)

Query: 42 EGAALSLARLSKRTQLRMSTLRRFLSALEEAGVVKVEMNE 81
          EG+ LSL+ +S ++ L  ST  R L+ LE  G+V+ + ++
Sbjct: 39 EGSGLSLSEISAQSGLAASTAYRMLTTLENHGMVEFDTSD 78


>BS_yufM [KT] COG4565 Response regulator of citrate/malate metabolism Bsu
           Bacillus subtilis
          Length = 235

 Score = 29.3 bits (64), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 13/46 (28%), Positives = 26/46 (56%)

Query: 34  LQADAQEKEGAALSLARLSKRTQLRMSTLRRFLSALEEAGVVKVEM 79
           + +  Q  E  + +   L+K T++   ++R++L  LE+  V+ VEM
Sbjct: 164 IWSSIQSFENESFTTEDLAKHTEISQVSIRKYLKFLEDIQVLNVEM 209