BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1555.p (433 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 646 0.0 RSc0926 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 634 0.0 dadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco... 611 e-174 ZdadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ec... 611 e-174 ECs1684 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) ... 611 e-174 >YPO2147 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ype Yersinia pestis Length = 434 Score = 646 bits (1666), Expect = 0.0, Method: Compositional matrix adjust. Identities = 306/418 (73%), Positives = 355/418 (84%), Gaps = 3/418 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GVTSAWYLA+ GHDVTV+DRQ GPA ETS GNAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVTSAWYLAKEGHDVTVIDRQDGPAQETSAGNAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 PLKAIKWMFQ HAPLAIR DG+ QLRWMWQMLRNC+ Y +NK RMVRLAEYSRDCL+ Sbjct: 61 PLKAIKWMFQRHAPLAIRLDGSSLQLRWMWQMLRNCDTSHYMVNKSRMVRLAEYSRDCLK 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 +LRA GI YEGR+ GTLQLFR+++Q D AAKDIAVL +AGVP+ LLT EQL EPAL Sbjct: 121 DLRAATGIQYEGRQGGTLQLFRTEQQFDNAAKDIAVLDDAGVPYSLLTAEQLATVEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 KV KLTGGLRLPNDETGDC+LFT RLAKMAEQ GVKF ++ ++D L + G +IAGV+CG Sbjct: 181 KVAHKLTGGLRLPNDETGDCKLFTERLAKMAEQAGVKFIFNRSVDKLLVEGDQIAGVLCG 240 Query: 241 KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAPVSTILDETY 300 ++++AD+YVVA G+YS +L GL +IPVYPLKGYS+T+PITD +AP ST+LDETY Sbjct: 241 DDIIKADAYVVAFGAYSTALL---AGLVSIPVYPLKGYSLTIPITDPASAPFSTVLDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQASFWTGLRPM 360 KIA+TRFDDRIRVGGMAEIVG++T L RR TLEMVV DL+P GD +QA FW+GLRPM Sbjct: 298 KIAITRFDDRIRVGGMAEIVGFNTQLAPARRETLEMVVRDLYPHGGDISQAVFWSGLRPM 357 Query: 361 TPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAIAHEDLSVARY 418 TPDGTP+VG TP+ NL++NTGHGTLGWTM+CGSGQLLAD+I GRRPAI +DLSVARY Sbjct: 358 TPDGTPIVGRTPLKNLYLNTGHGTLGWTMACGSGQLLADIIQGRRPAIVADDLSVARY 415 >RSc0926 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Rso Ralstonia solanacearum Length = 429 Score = 634 bits (1635), Expect = 0.0, Method: Compositional matrix adjust. Identities = 302/422 (71%), Positives = 359/422 (85%), Gaps = 3/422 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRV++LGSGVIGVTSA+YLARAGH+VTV+DR+ GPAL+TSF NAGQISPGYASPWAAPG+ Sbjct: 1 MRVLVLGSGVIGVTSAYYLARAGHEVTVVDREAGPALDTSFANAGQISPGYASPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 PLKAIKWMFQ+HAPL+IRPDGTL QL+WMWQMLRNCNA SYA NKERMVRLAEYSRDC+R Sbjct: 61 PLKAIKWMFQQHAPLSIRPDGTLFQLQWMWQMLRNCNAASYAENKERMVRLAEYSRDCIR 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 LRA+ GI YEGR+QGTLQ+FR+Q+QLDGAA DIAVL+ AGVP+ELL+ + L +EP L Sbjct: 121 ALRAETGIAYEGRQQGTLQVFRTQQQLDGAANDIAVLERAGVPYELLSRDDLVRSEPGLA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 R KL GGLRLPNDETGDCQLFTTRLA MAE+LGV+FR++ I++L + + G + Sbjct: 181 STRHKLAGGLRLPNDETGDCQLFTTRLAAMAEKLGVRFRFNSRINSLIVQNDAVRGALVD 240 Query: 241 KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAPVSTILDETY 300 E + AD VVA+GSYS L+++ G +PVYPLKG+SITVP+TDA +PVST+LDETY Sbjct: 241 GEAMTADLVVVAMGSYSTPFLKNLVG---VPVYPLKGFSITVPMTDAERSPVSTVLDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQASFWTGLRPM 360 K+A+TRFDDRIRVGGMA+IVGYD L +R TLE VV+DLFPG GD ++A+FWTGLRPM Sbjct: 298 KVAITRFDDRIRVGGMAQIVGYDKRLDPGKRKTLEFVVSDLFPGGGDVSRATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAIAHEDLSVARYMQ 420 TPDGTP+VG TPV L+INTGHGTLGWTM+CGSGQLL+DL+SGR PAI +DLSV RY++ Sbjct: 358 TPDGTPIVGPTPVRGLWINTGHGTLGWTMACGSGQLLSDLVSGRSPAIRADDLSVYRYLR 417 Query: 421 SG 422 G Sbjct: 418 GG 419 >dadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Eco Escherichia coli K12 Length = 432 Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust. Identities = 292/418 (69%), Positives = 343/418 (82%), Gaps = 3/418 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GV SAWYL +AGH+VTV+DR+PG ALETS NAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 PLKAIKWMFQ HAPLA+R DGT QL+WMWQMLRNC+ Y NK RMVRLAEYSRDCL+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 LRA+ I YEGR+ GTLQLFR+++Q + A +DIAVL++AGVP++LL +L EPAL Sbjct: 121 ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 +V KLTGGL+LPNDETGDCQLFT LA+MAEQ GVKFR++ +D L G +I GV CG Sbjct: 181 EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCG 240 Query: 241 KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAPVSTILDETY 300 E+++AD+YV+A GSYS ML+ G+ IPVYPLKGYS+T+PI APVSTILDETY Sbjct: 241 DEVIKADAYVMAFGSYSTAMLK---GIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQASFWTGLRPM 360 KIA+TRFD+RIRVGGMAEIVG++T L RR TLEMVV DL+P G QA+FWTGLRPM Sbjct: 298 KIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAIAHEDLSVARY 418 TPDGTPVVG T NL++NTGHGTLGWTM+CGSGQLL+DL+SGR PAI +EDLSVARY Sbjct: 358 TPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARY 415 >ZdadA [E] COG0665 Glycine/D-amino acid oxidases (deaminating) EcZ Escherichia coli O157:H7 EDL933 Length = 432 Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust. Identities = 292/418 (69%), Positives = 343/418 (82%), Gaps = 3/418 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GV SAWYL +AGH+VTV+DR+PG ALETS NAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 PLKAIKWMFQ HAPLA+R DGT QL+WMWQMLRNC+ Y NK RMVRLAEYSRDCL+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 LRA+ I YEGR+ GTLQLFR+++Q + A +DIAVL++AGVP++LL +L EPAL Sbjct: 121 ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 +V KLTGGL+LPNDETGDCQLFT LA+MAEQ GVKFR++ +D L G +I GV CG Sbjct: 181 EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCG 240 Query: 241 KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAPVSTILDETY 300 E+++AD+YV+A GSYS ML+ G+ IPVYPLKGYS+T+PI APVSTILDETY Sbjct: 241 DEVIKADAYVMAFGSYSTAMLK---GIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQASFWTGLRPM 360 KIA+TRFD+RIRVGGMAEIVG++T L RR TLEMVV DL+P G QA+FWTGLRPM Sbjct: 298 KIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAIAHEDLSVARY 418 TPDGTPVVG T NL++NTGHGTLGWTM+CGSGQLL+DL+SGR PAI +EDLSVARY Sbjct: 358 TPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARY 415 >ECs1684 [E] COG0665 Glycine/D-amino acid oxidases (deaminating) Ecs Escherichia coli O157:H7 Length = 432 Score = 611 bits (1575), Expect = e-174, Method: Compositional matrix adjust. Identities = 292/418 (69%), Positives = 343/418 (82%), Gaps = 3/418 (0%) Query: 1 MRVVILGSGVIGVTSAWYLARAGHDVTVLDRQPGPALETSFGNAGQISPGYASPWAAPGI 60 MRVVILGSGV+GV SAWYL +AGH+VTV+DR+PG ALETS NAGQISPGYA+PWAAPG+ Sbjct: 1 MRVVILGSGVVGVASAWYLNQAGHEVTVIDREPGAALETSAANAGQISPGYAAPWAAPGV 60 Query: 61 PLKAIKWMFQEHAPLAIRPDGTLNQLRWMWQMLRNCNADSYAINKERMVRLAEYSRDCLR 120 PLKAIKWMFQ HAPLA+R DGT QL+WMWQMLRNC+ Y NK RMVRLAEYSRDCL+ Sbjct: 61 PLKAIKWMFQRHAPLAVRLDGTQFQLKWMWQMLRNCDTSHYMENKGRMVRLAEYSRDCLK 120 Query: 121 ELRADVGIPYEGREQGTLQLFRSQEQLDGAAKDIAVLKEAGVPFELLTPEQLGGAEPALE 180 LRA+ I YEGR+ GTLQLFR+++Q + A +DIAVL++AGVP++LL +L EPAL Sbjct: 121 ALRAETNIQYEGRQGGTLQLFRTEQQYENATRDIAVLEDAGVPYQLLESSRLAEVEPALA 180 Query: 181 KVRGKLTGGLRLPNDETGDCQLFTTRLAKMAEQLGVKFRYDVAIDALTMAGGKIAGVVCG 240 +V KLTGGL+LPNDETGDCQLFT LA+MAEQ GVKFR++ +D L G +I GV CG Sbjct: 181 EVAHKLTGGLQLPNDETGDCQLFTQNLARMAEQAGVKFRFNTPVDQLLCDGEQIYGVKCG 240 Query: 241 KELVQADSYVVALGSYSPQMLRDVPGLPAIPVYPLKGYSITVPITDATAAPVSTILDETY 300 E+++AD+YV+A GSYS ML+ G+ IPVYPLKGYS+T+PI APVSTILDETY Sbjct: 241 DEVIKADAYVMAFGSYSTAMLK---GIVDIPVYPLKGYSLTIPIAQEDGAPVSTILDETY 297 Query: 301 KIAVTRFDDRIRVGGMAEIVGYDTALRAKRRATLEMVVNDLFPGAGDTTQASFWTGLRPM 360 KIA+TRFD+RIRVGGMAEIVG++T L RR TLEMVV DL+P G QA+FWTGLRPM Sbjct: 298 KIAITRFDNRIRVGGMAEIVGFNTELLQPRRETLEMVVRDLYPRGGHVEQATFWTGLRPM 357 Query: 361 TPDGTPVVGATPVSNLFINTGHGTLGWTMSCGSGQLLADLISGRRPAIAHEDLSVARY 418 TPDGTPVVG T NL++NTGHGTLGWTM+CGSGQLL+DL+SGR PAI +EDLSVARY Sbjct: 358 TPDGTPVVGRTRFKNLWLNTGHGTLGWTMACGSGQLLSDLLSGRTPAIPYEDLSVARY 415