BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1540.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value STM3560 [E] COG0410 ABC-type branched-chain amino acid transport... 335 5e-92 ZlivF [E] COG0410 ABC-type branched-chain amino acid transport s... 334 1e-91 ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport... 334 1e-91 livF [E] COG0410 ABC-type branched-chain amino acid transport sy... 333 2e-91 YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport... 320 2e-87 >STM3560 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Sty Salmonella typhimurium LT2 Length = 237 Score = 335 bits (859), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 162/232 (69%), Positives = 190/232 (81%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML F+KV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRASSGRV+F Sbjct: 5 MLTFEKVSAHYGKIQALHDVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRASSGRVVF 64 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 +G+DIT T +IMR +AI PEGRRVF +TV ENL MG FFA + ++ I +V+ LF Sbjct: 65 DGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDRFQERIKWVYELF 124 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS+PRLLLLDEP+LGLAP++I QIF+ I +R Sbjct: 125 PRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 184 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SD+G LLAN VR AYLG Sbjct: 185 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 236 >ZlivF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component EcZ Escherichia coli O157:H7 EDL933 Length = 241 Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 189/232 (81%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRA+SGR++F Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 + +DIT T +IMR +AI PEGRRVF +TV ENL MG FFA ++ ++ I +V+ LF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIF+ I +R Sbjct: 129 PRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SD+G LLAN VR AYLG Sbjct: 189 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240 >ECs4301 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ecs Escherichia coli O157:H7 Length = 241 Score = 334 bits (856), Expect = 1e-91, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 189/232 (81%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRA+SGR++F Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 + +DIT T +IMR +AI PEGRRVF +TV ENL MG FFA ++ ++ I +V+ LF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIF+ I +R Sbjct: 129 PRLHERRVQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SD+G LLAN VR AYLG Sbjct: 189 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240 >livF [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Eco Escherichia coli K12 Length = 241 Score = 333 bits (854), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 160/232 (68%), Positives = 189/232 (81%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML FDKV HYG I+ALH VSL++ +GEIVTLIGANGAGKTTLL TLCG PRA+SGR++F Sbjct: 9 MLSFDKVSAHYGKIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVF 68 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 + +DIT T +IMR +AI PEGRRVF +TV ENL MG FFA ++ ++ I +V+ LF Sbjct: 69 DDKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELF 128 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS PRLLLLDEP+LGLAP++I QIF+ I +R Sbjct: 129 PRLHERRIQRAGTMSGGEQQMLAIGRALMSNPRLLLLDEPSLGLAPIIIQQIFDTIEQLR 188 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 G+T+FLVEQNAN+AL +ADRGYVLENGHVV+SD+G LLAN VR AYLG Sbjct: 189 EQGMTIFLVEQNANQALKLADRGYVLENGHVVLSDTGDALLANEAVRSAYLG 240 >YPO3804 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Ype Yersinia pestis Length = 233 Score = 320 bits (819), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 155/232 (66%), Positives = 186/232 (80%) Query: 1 MLQFDKVHTHYGAIEALHGVSLNVEKGEIVTLIGANGAGKTTLLMTLCGRPRASSGRVIF 60 ML F++V HYG I+ALH VSL++++GEIVTLIGANGAGKTTLL TLCG PRA+ G ++F Sbjct: 1 MLSFNQVSAHYGKIQALHQVSLHIQQGEIVTLIGANGAGKTTLLGTLCGEPRATEGNIVF 60 Query: 61 EGQDITRLPTHEIMRRGLAISPEGRRVFPSLTVLENLKMGAFFASNEEIEQGIAYVFGLF 120 QDIT T IMR +AI PEGRRVF +TV ENL MG FFA ++ +Q I V+ LF Sbjct: 61 GEQDITHWQTARIMREAIAIVPEGRRVFSRMTVEENLAMGGFFADRQQYQQRIERVYDLF 120 Query: 121 PRLKERAAQRAGTMSGGEQQMLAIGRALMSKPRLLLLDEPTLGLAPLVIAQIFEIIRTIR 180 PRL ER QRAGTMSGGEQQMLAIGRALMS+P+LLLLDEP+LGLAP++I QIF+ I+ +R Sbjct: 121 PRLFERRIQRAGTMSGGEQQMLAIGRALMSQPKLLLLDEPSLGLAPIIILQIFDTIQQLR 180 Query: 181 ASGVTVFLVEQNANKALGVADRGYVLENGHVVMSDSGANLLANSEVRKAYLG 232 G+T+FLVEQNAN+AL +ADRGYVLENG +V+ D+GA LLAN VR AYLG Sbjct: 181 EEGMTIFLVEQNANQALKLADRGYVLENGRIVLEDTGAALLANEAVRSAYLG 232