BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1538.p (408 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport... 472 e-133 PA1072 [E] COG4177 ABC-type branched-chain amino acid transport ... 455 e-128 STM3562 [E] COG4177 ABC-type branched-chain amino acid transport... 441 e-123 livM [E] COG4177 ABC-type branched-chain amino acid transport sy... 437 e-122 ZlivM [E] COG4177 ABC-type branched-chain amino acid transport s... 437 e-122 >YPO3806 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Ype Yersinia pestis Length = 428 Score = 472 bits (1215), Expect = e-133, Method: Compositional matrix adjust. Identities = 246/412 (59%), Positives = 304/412 (73%), Gaps = 10/412 (2%) Query: 4 TFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVLN----THWTPVLVAVLAVFLFQLAKPT 59 F NA+ ++ V VL ++G+QLQL+G R+V+ W + L VF FQL +P Sbjct: 5 NFVNAIISSFVLLVLASFVMGLQLQLDGTRLVVQGASEVRWLWIGAGCLVVFCFQLVRPL 64 Query: 60 LARGTASIK-----LPALPRLAPRQQRAALVLLLLAALVWPFFGSRGYVDVMTLALIYVV 114 + +G + LP+ PRQ + ++++AA+ WPF SRG VD+ TL LIYV+ Sbjct: 65 IQQGIKKVSGPAWVLPSFDGTTPRQ-KLLAAVVIIAAVAWPFLVSRGSVDIATLTLIYVM 123 Query: 115 LGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLG 174 LGLGLN+VVG +GLL LGY GFYA+GAYTYAL N Y+GL FWE +PL+ AAL GFLLG Sbjct: 124 LGLGLNVVVGLSGLLVLGYGGFYAIGAYTYALLNHYYGLGFWESLPLAGITAALSGFLLG 183 Query: 175 FPVLRLRGDYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKPTVFGLVMARNPVTEG 234 FPVLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+GIS IPKPT+FGL +R G Sbjct: 184 FPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAKDGG 243 Query: 235 GTTFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRS 294 TFH FGL+Y H +IF+Y +ALL+V+ T FV +RLLRMP+GRAWEALREDEIACRS Sbjct: 244 WDTFHNFFGLTYDPSHRIIFLYLVALLLVILTLFVINRLLRMPLGRAWEALREDEIACRS 303 Query: 295 LGINPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQL 354 LG++PT++KL+AFT+ AAFAG AG+ FAARQG V+PESFTF+ESA +LAIVVLGGMGSQ Sbjct: 304 LGLSPTKIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFVESAFVLAIVVLGGMGSQF 363 Query: 355 GVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 VILAA+LL V EL R Y ML+ G +MVLMM+WRPQGLLP RP ++L Sbjct: 364 AVILAAVLLVVSRELMRDLNAYSMLLLGALMVLMMIWRPQGLLPMKRPQLKL 415 >PA1072 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Pae Pseudomonas aeruginosa Length = 417 Score = 455 bits (1171), Expect = e-128, Method: Compositional matrix adjust. Identities = 258/418 (61%), Positives = 319/418 (76%), Gaps = 15/418 (3%) Query: 1 MPETFKNAVAAALVTAVLTIPLLGMQLQLEGYRVVL-----NTHWTPVLVAVLAVFLFQL 55 M ++ K A+ +AL+ +++ P+LG++L+ G ++ + T WT + A LA+F++QL Sbjct: 1 MSQSLKRALFSALLVILVSYPILGLKLRTVGIKLEVLGADAQTLWT-IAAAALAMFVWQL 59 Query: 56 AKP----TLARGTA-SIKLPALPRLA--PRQQRAALVLLLLAALVWPFFGSRGYVDVMTL 108 + L RG + L P QR A++ L++ A VWPFF SRG VD+ TL Sbjct: 60 FRDRIPLKLGRGVGYKVNGSGLKNFLSLPSTQRWAVLALVVVAFVWPFFASRGAVDIATL 119 Query: 109 ALIYVVLGLGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAAL 168 LIYV+LG+GLNIVVG AGLLDLGYVGFYAVGAYTYAL +Y G FW +P++ AAL Sbjct: 120 ILIYVMLGIGLNIVVGLAGLLDLGYVGFYAVGAYTYALLAEYAGFGFWTALPIAGMMAAL 179 Query: 169 FGFLLGFPVLRLRGDYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKPTVFGLVMAR 228 FGFLLGFPVLRLRGDYLAIVTLGFGEIIR+LL N+T ITGGP+GI IPKPT+FGL R Sbjct: 180 FGFLLGFPVLRLRGDYLAIVTLGFGEIIRILLRNMTEITGGPNGIGSIPKPTLFGLTFER 239 Query: 229 NPVTEGGTTFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMGRAWEALRED 288 EG TFH+ FG++Y + VI +Y +ALL+VL FV +RL+RMP+GRAWEALRED Sbjct: 240 R-APEGMQTFHEFFGIAYNTNYKVILLYVVALLLVLLALFVINRLMRMPIGRAWEALRED 298 Query: 289 EIACRSLGINPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLG 348 E+ACR+LG+NPT VKLSAFT+GA+FAG AGSFFAARQGLVTPESFTFIESA+ILAIVVLG Sbjct: 299 EVACRALGLNPTIVKLSAFTIGASFAGFAGSFFAARQGLVTPESFTFIESAMILAIVVLG 358 Query: 349 GMGSQLGVILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVEL 406 GMGSQLGVILAA+++ +L E+ R F EYRMLIFGL M++MM+WRPQGLLP RPH+EL Sbjct: 359 GMGSQLGVILAAVVMVLLQEM-RGFNEYRMLIFGLTMIVMMIWRPQGLLPMQRPHLEL 415 >STM3562 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Sty Salmonella typhimurium LT2 Length = 425 Score = 441 bits (1134), Expect = e-123, Method: Compositional matrix adjust. Identities = 239/412 (58%), Positives = 302/412 (73%), Gaps = 12/412 (2%) Query: 9 VAAALVTA----VLTIPLLGMQLQLEGYRVVLNT----HWTPVLVAVLAVFLFQLAKPTL 60 +A AL +A VL +G+QL+L+G ++V++T W + + VF FQL +P Sbjct: 6 IAMALFSAAMFFVLAGVFMGVQLELDGTKLVVDTAADIRWQWIFIGTAVVFFFQLLRPMF 65 Query: 61 ARGTASIKLPA--LPRL--APRQQRAALVLLLLAALVWPFFGSRGYVDVMTLALIYVVLG 116 + + P LP + + +Q+ L+ LL+ A+ WPF SRG VD+ T+ +IY++LG Sbjct: 66 QKAVKHVSGPKFILPAIDGSTVKQKLFLMALLVIAVAWPFMVSRGSVDIATMTMIYIILG 125 Query: 117 LGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFP 176 LGLN+VVG +GLL LGY GFYA+GAYT+AL N Y+GL FW C+PL+ +A GFLLGFP Sbjct: 126 LGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPLAGLVSAAAGFLLGFP 185 Query: 177 VLRLRGDYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKPTVFGLVMARNPVTEGGT 236 VLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+GIS IPKPT+FGL +R+ G Sbjct: 186 VLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRSTREGGWD 245 Query: 237 TFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLG 296 TF FG+ Y VIF+Y +ALL+V+ + FV +RLLRMP+GRAWEALREDEIACRSLG Sbjct: 246 TFSNFFGVKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLG 305 Query: 297 INPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGV 356 ++PTR+KL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ V Sbjct: 306 LSPTRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAV 365 Query: 357 ILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 ILAA+LL V EL R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 366 ILAAVLLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKS 417 >livM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Eco Escherichia coli K12 Length = 425 Score = 437 bits (1125), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/412 (59%), Positives = 303/412 (73%), Gaps = 12/412 (2%) Query: 9 VAAALVTA----VLTIPLLGMQLQLEGYRVVLNT----HWTPVLVAVLAVFLFQLAKPTL 60 +A AL++A VL +G+QL+L+G ++V++T W V + VF FQL +P Sbjct: 6 IAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAF 65 Query: 61 ARGTASIKLPA--LPRL--APRQQRAALVLLLLAALVWPFFGSRGYVDVMTLALIYVVLG 116 +G S+ P LP + + +Q+ LV LL+ A+ WPF SRG VD+ TL +IY++LG Sbjct: 66 QKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILG 125 Query: 117 LGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFP 176 LGLN+VVG +GLL LGY GFYA+GAYT+AL N Y+GL FW C+P++ AA GFLLGFP Sbjct: 126 LGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFP 185 Query: 177 VLRLRGDYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKPTVFGLVMARNPVTEGGT 236 VLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+GIS IPKPT+FGL +R G Sbjct: 186 VLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWD 245 Query: 237 TFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLG 296 TF FGL Y VIF+Y +ALL+V+ + FV +RLLRMP+GRAWEALREDEIACRSLG Sbjct: 246 TFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLG 305 Query: 297 INPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGV 356 ++P R+KL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ V Sbjct: 306 LSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAV 365 Query: 357 ILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 ILAAILL V EL R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 366 ILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417 >ZlivM [E] COG4177 ABC-type branched-chain amino acid transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 425 Score = 437 bits (1124), Expect = e-122, Method: Compositional matrix adjust. Identities = 245/412 (59%), Positives = 302/412 (73%), Gaps = 12/412 (2%) Query: 9 VAAALVTA----VLTIPLLGMQLQLEGYRVVLNT----HWTPVLVAVLAVFLFQLAKPTL 60 +A AL++A VL +G+QL+L+G ++V++T W V + VF FQL +P Sbjct: 6 IAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDIRWQWVFIGTAVVFFFQLLRPAF 65 Query: 61 ARGTASIKLPA--LPRL--APRQQRAALVLLLLAALVWPFFGSRGYVDVMTLALIYVVLG 116 +G S+ P LP + + +Q+ LV LL+ A+ WPF SRG VD+ TL +IY++LG Sbjct: 66 QKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILG 125 Query: 117 LGLNIVVGFAGLLDLGYVGFYAVGAYTYALCNQYFGLSFWECVPLSAAAAALFGFLLGFP 176 LGLN+VVG +GLL LGY GFYA+GAYT+AL N Y+GL FW C+P++ AA GFLLGFP Sbjct: 126 LGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFP 185 Query: 177 VLRLRGDYLAIVTLGFGEIIRLLLNNLTSITGGPDGISGIPKPTVFGLVMARNPVTEGGT 236 VLRLRGDYLAIVTLGFGEI+R+LL N T ITGGP+GIS IPKPT FGL +R G Sbjct: 186 VLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTFFGLEFSRTAREGGWD 245 Query: 237 TFHQVFGLSYQGGHMVIFMYFLALLMVLFTYFVTSRLLRMPMGRAWEALREDEIACRSLG 296 TF FGL Y VIF+Y +ALL+V+ + FV +RLLRMP+GRAWEALREDEIACRSLG Sbjct: 246 TFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLG 305 Query: 297 INPTRVKLSAFTLGAAFAGLAGSFFAARQGLVTPESFTFIESALILAIVVLGGMGSQLGV 356 ++P R+KL+AFT+ AAFAG AG+ FAARQG V+PESFTF ESA +LAIVVLGGMGSQ V Sbjct: 306 LSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAV 365 Query: 357 ILAAILLTVLPELARSFAEYRMLIFGLVMVLMMMWRPQGLLPATRPHVELPQ 408 ILAAILL V EL R F EY ML+ G +MVLMM+WRPQGLLP TRP ++L Sbjct: 366 ILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKN 417