BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1535.p (258 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc04328 [S] COG3698 Predicted periplasmic protein Sme Sinorhizo... 159 8e-39 DR2601 [S] COG3698 Predicted periplasmic protein Dra Deinococcus... 155 1e-37 mlr0120 Non COG 149 5e-36 yigEm [S] COG3698 Predicted periplasmic protein Eco Escherichia ... 140 3e-33 AGc3235 [S] COG3698 Predicted periplasmic protein Atu Agrobacter... 140 4e-33 >SMc04328 [S] COG3698 Predicted periplasmic protein Sme Sinorhizobium meliloti Length = 250 Score = 159 bits (401), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 86/216 (39%), Positives = 128/216 (59%), Gaps = 9/216 (4%) Query: 44 CRADPRNDTIRMYWKDANGTPLGNFSRLDAHLRSQGQEMVCATNAGIYDKQLQPLGLYVE 103 C DP IR+Y KD G P +F L LR + Q +V A N G+Y + L P+GL+VE Sbjct: 40 CSFDPATSDIRLYNKDQAGVPFRSFRALSLELRRREQYLVFAMNGGMYHEDLAPVGLHVE 99 Query: 104 GGNQLRRLNTRKNAYGNFYLQPNGVFVLSDRQAYIVETSDYQAELGLWNGVARYATQSGP 163 G + LNT +GNF++ PNGVF + D +A ++ Y+ L R+ATQSGP Sbjct: 100 EGAEQAPLNTNP-GWGNFHMLPNGVFYVGDGKAGVMAAEAYR----LAGIEPRFATQSGP 154 Query: 164 LMIVEGRINPRFDPASANTVVRNAVCLDAAGMVTLAIARNPISFYDFASFLRDELKCSDA 223 +++++G ++PRF P S + RN V + G V A+++ P+ F+DFA+ RD L C +A Sbjct: 155 MLVIDGALHPRFLPDSDSLKTRNGVGVTPNGQVVFAVSKRPVRFHDFATLFRDALDCPNA 214 Query: 224 LYLDGSISRMY-PTLEAN--MGPAFGAMIAVVKPYP 256 L+LDG+IS +Y P + + + P G +IAVV +P Sbjct: 215 LFLDGTISSLYAPEINRHDRLFP-LGPIIAVVAKFP 249 >DR2601 [S] COG3698 Predicted periplasmic protein Dra Deinococcus radiodurans Length = 247 Score = 155 bits (391), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 84/191 (43%), Positives = 119/191 (62%), Gaps = 5/191 (2%) Query: 42 STCRADPRNDTIRMYWKD-ANGTPLGNFSRLDAHLRSQGQEMVCATNAGIYDKQLQPLGL 100 + DP D + ++W + A G P +F++L + L QG++++ ATN+GIY +PLGL Sbjct: 38 TVATVDPARDQLTLHWLNPATGKPYSSFAQLGSRLGKQGKKLLFATNSGIYMPGPKPLGL 97 Query: 101 YVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSDRQAYIVETSDYQAELGLWNGVARYATQ 160 +VEGG L LN GNF L PNGVF L ++A + ET Y+ +LGL YATQ Sbjct: 98 HVEGGKTLVGLNNAGKGGGNFALLPNGVFWLRGKKAGVTETQAYR-KLGL---APDYATQ 153 Query: 161 SGPLMIVEGRINPRFDPASANTVVRNAVCLDAAGMVTLAIARNPISFYDFASFLRDELKC 220 SGPL++ G+++P F+ + + VR+ V + G V AI+ P++FY FA+F RD L C Sbjct: 154 SGPLLVANGKLHPDFNKSGTSFKVRSGVGVCGGGKVRFAISAGPVNFYSFATFFRDTLGC 213 Query: 221 SDALYLDGSIS 231 DALYLDGSIS Sbjct: 214 PDALYLDGSIS 224 >mlr0120 Non COG Length = 263 Score = 149 bits (377), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 124/223 (55%), Gaps = 11/223 (4%) Query: 32 RQYQYHQVFISTCRADPRNDTIRMYWKDANGTPLGNFSRLDAHLRSQGQEMVCATNAGIY 91 R + + C DP+ +I ++WKD G P + LDA R+ G+ M+ A NAG+Y Sbjct: 42 RDFAFEATSYLICEVDPKLYSIELFWKDPVGKPFQSLHNLDAAQRAAGRTMLFAINAGMY 101 Query: 92 DKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSDRQAYIVETSDYQAELGLW 151 L+P+GLYVE G ++ + T + GNF LQPNG+F +S +A + T D+ + Sbjct: 102 HPDLRPVGLYVERGREMAGVRTGSGS-GNFSLQPNGIFYISGGKAAVRATRDFVRK---- 156 Query: 152 NGVARYATQSGPLMIVEGRINPRFDPASANTVVRNAVCLDAAGMVTLAIARNPISFYDFA 211 YATQSGP+++++G+++P+F + R+ V + G+ AI+ ++F+ FA Sbjct: 157 RPSTDYATQSGPMLVIDGQLHPKFQSDGTSRKTRDGVGVRKDGVAVFAISNGTVNFHTFA 216 Query: 212 SFLRDELKCSDALYLDGSISRMY-PTLEA-----NMGPAFGAM 248 RD L C +AL+LDG+IS ++ P + N+GP G Sbjct: 217 RLFRDALGCDNALFLDGTISSLFAPAIGRNDDYWNLGPMIGVF 259 >yigEm [S] COG3698 Predicted periplasmic protein Eco Escherichia coli K12 Length = 254 Score = 140 bits (353), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 79/222 (35%), Positives = 121/222 (54%), Gaps = 10/222 (4%) Query: 13 LLALSCLALWSASAAAADIRQYQYHQVFISTCRADPRNDTIRMYWKDANGTPLGNFSRLD 72 LAL+ L L+ A AAD + + +P+ + ++MYW+ ANG G L Sbjct: 20 FLALTLLPLF---AVAADDCALSDPTLTVQAYTVNPQTERVKMYWQKANGEAWGTLHALL 76 Query: 73 AHLRSQGQEMVCATNAGIYDKQLQPLGLYVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLS 132 A + SQGQ + A N GIYD+ PLGLY+E G Q LN + GNF+++P GVF ++ Sbjct: 77 ADINSQGQ-VQMAMNGGIYDESYAPLGLYIENGQQKVALNL-ASGEGNFFIRPGGVFYVA 134 Query: 133 DRQAYIVETSDYQAELGLWNGVARYATQSGPLMIVEGRINPRFDPASANTVVRNAVCLDA 192 + IV ++ + ++A QSGP+++ G INPR P A++ +RN V ++ Sbjct: 135 GDKVGIVRLDAFKTSKEI-----QFAVQSGPMLMENGVINPRIHPNVASSKIRNGVGINK 189 Query: 193 AGMVTLAIARNPISFYDFASFLRDELKCSDALYLDGSISRMY 234 G +++ +FYDFA + + +L LYLDG+IS MY Sbjct: 190 HGNAVFLLSQQATNFYDFACYAKAKLNVEQLLYLDGTISHMY 231 >AGc3235 [S] COG3698 Predicted periplasmic protein Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 254 Score = 140 bits (352), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/222 (38%), Positives = 124/222 (55%), Gaps = 16/222 (7%) Query: 42 STCRADPRNDTIRMYWKD-ANGTPLGNFSRLDAHLRSQGQEMVCATNAGIYDKQLQPLGL 100 + C DP +TIR+Y +D +G NF+ L + L Q V A N G+Y P+GL Sbjct: 41 TVCSFDPAKNTIRIYDQDHVSGQGYRNFADLSSALWRQHMFSVFAMNGGMYHSDYSPVGL 100 Query: 101 YVEGGNQLRRLNTRKNAYGNFYLQPNGVFVLSDRQAYIVETSDYQAELGLWNGVARYATQ 160 +VE G + ++TR +GNF+L PNGVF L A ++ET Y A + +ATQ Sbjct: 101 FVENGVERSPVSTR-GGWGNFHLLPNGVFYLDGNTAGVLETEAYLAA----DPKPDFATQ 155 Query: 161 SGPLMIVEGRINPRFDPASANTVVRNAVCLDAAGMVTLAIARNPISFYDFASFLRDELKC 220 SGP+++++G+++PRF P S + RN V + GMV AI+ + FYDF + RD L Sbjct: 156 SGPMLVIDGKLHPRFLPDSDSLKRRNGVGVSRDGMVHFAISETTVRFYDFGTLFRDVLDA 215 Query: 221 SDALYLDGSISRM-YPTLEA-----NMGPAFGAMIAVVKPYP 256 +ALYLDG+IS + P + +MGP +IAVV P Sbjct: 216 PNALYLDGTISSVDIPAMNRRDQLFSMGP----IIAVVDRVP 253