BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1525.p (281 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3443 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transp... 341 9e-94 YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 341 1e-93 ssuC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transpor... 319 5e-87 RSc1340 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate trans... 317 2e-86 ZycbM [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transpo... 315 8e-86 >PA3443 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Pae Pseudomonas aeruginosa Length = 262 Score = 341 bits (875), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 166/243 (68%), Positives = 202/243 (83%) Query: 39 WILPLLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSASGELWHHLAVSSGRAAAGFA 98 W LPL+LL W+ A + GWLSSRILP P AVL+A W L SGE+W HLA+S RAA GF Sbjct: 14 WALPLVLLAVWQAAVEFGWLSSRILPAPSAVLEAGWALLRSGEIWQHLAISGWRAAIGFL 73 Query: 99 VGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVG 158 +G +GL+LG ++G +W E LD+++QM+RN+P LALIPLVILWFGIDE+AK+FLV++G Sbjct: 74 IGGAIGLVLGFVTGLSKWGERFLDSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALG 133 Query: 159 VFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFALGLVWV 218 FP+YLNT+HGIR +D GL+EMA+SYGLSG+ L+R VILPGALPSILVG+RFALG +W+ Sbjct: 134 TLFPIYLNTYHGIRGIDPGLLEMARSYGLSGFALFRQVILPGALPSILVGVRFALGFMWL 193 Query: 219 LLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARALERFWLRWHP 278 LIVAETISA +GIGY+ MNAREFLQTDVV++ ILLYA+LGKLAD AAR LER WLRWHP Sbjct: 194 TLIVAETISASSGIGYLAMNAREFLQTDVVVLAILLYAVLGKLADLAARGLERVWLRWHP 253 Query: 279 GYQ 281 YQ Sbjct: 254 AYQ 256 >YPO3626 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Ype Yersinia pestis Length = 265 Score = 341 bits (874), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 161/243 (66%), Positives = 206/243 (84%) Query: 39 WILPLLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSASGELWHHLAVSSGRAAAGFA 98 WILP+ L+V W++A +AGWLS+RILP P AV+ A W L+ SGELW HL +SS RA GF+ Sbjct: 16 WILPVALVVGWQVAVEAGWLSNRILPAPSAVVTAFWALTKSGELWQHLTISSWRALIGFS 75 Query: 99 VGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVG 158 +G +GL+LG+++G RW E LL++++QM+RN+P LALIPLVILWFGIDE+AK+FLV++G Sbjct: 76 IGGSIGLVLGVITGLSRWGERLLNSSVQMIRNVPHLALIPLVILWFGIDESAKIFLVALG 135 Query: 159 VFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFALGLVWV 218 FP+YLNT+HGI+++D GL+EMA+SYGLSG+ L V+LPGALPSI+VG+RFALG +W+ Sbjct: 136 TLFPIYLNTYHGIKNIDSGLLEMARSYGLSGFRLLTQVVLPGALPSIMVGVRFALGFMWL 195 Query: 219 LLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARALERFWLRWHP 278 LIVAETISA +GIGY+ MNAREFLQTDVV+V I+LYALLGKLAD +A+ LER WLRWHP Sbjct: 196 TLIVAETISANSGIGYLAMNAREFLQTDVVVVAIVLYALLGKLADGSAQLLERVWLRWHP 255 Query: 279 GYQ 281 YQ Sbjct: 256 AYQ 258 >ssuC [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Eco Escherichia coli K12 Length = 278 Score = 319 bits (817), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 166/243 (68%), Positives = 206/243 (84%) Query: 39 WILPLLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSASGELWHHLAVSSGRAAAGFA 98 W LP+ ++ W++A+ GWLS+RILP P V+ A W LSASGELW HLA+SS RA GF+ Sbjct: 30 WFLPVGIVAVWQLASSVGWLSTRILPSPEGVVTAFWTLSASGELWQHLAISSWRALIGFS 89 Query: 99 VGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVG 158 +G LGLILGL+SG RW E LLDT++QM+RN+P LALIPLVILWFGIDE+AK+FLV++G Sbjct: 90 IGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALG 149 Query: 159 VFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFALGLVWV 218 FP+Y+NT+HGIR++D+GL+EMA+SYGLSG PL+ VILPGALPSI+VG+RFALGL+W+ Sbjct: 150 TLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWL 209 Query: 219 LLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARALERFWLRWHP 278 LIVAETISA +GIGY+ MNAREFLQTDVV+V I+LYALLGKLAD +A+ LER WLRW+P Sbjct: 210 TLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNP 269 Query: 279 GYQ 281 Y Sbjct: 270 AYH 272 >RSc1340 [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component Rso Ralstonia solanacearum Length = 264 Score = 317 bits (813), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 188/263 (71%), Positives = 221/263 (84%), Gaps = 3/263 (1%) Query: 19 SAQPKAAAKKSRPQRDAWIGWILPLLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSA 78 +++PK K +R + W+ +PL LL W+ AAQ GWLS+RILP P V ++A +L+ Sbjct: 2 ASKPKHVLKAARARLTPWL---VPLALLAAWQAAAQWGWLSNRILPAPLDVARSAIELAR 58 Query: 79 SGELWHHLAVSSGRAAAGFAVGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIP 138 SGELW H+AVS+ RA GFA+G LGL LGLL+G+ R AE LLDTTLQM+RNIP LALIP Sbjct: 59 SGELWKHVAVSTWRALLGFAIGGSLGLALGLLTGTFRTAETLLDTTLQMIRNIPVLALIP 118 Query: 139 LVILWFGIDETAKLFLVSVGVFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVIL 198 LVILWFGIDE+AKLFLVS+GVFFP+YLNT+HGIR+VD L+EMA+SYGLS LYR+VIL Sbjct: 119 LVILWFGIDESAKLFLVSLGVFFPIYLNTYHGIRAVDPALVEMARSYGLSRARLYREVIL 178 Query: 199 PGALPSILVGLRFALGLVWVLLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALL 258 PGALP ILVG+RF+LGL+WV LIVAET+SAQAGIGYMTMNAREFLQTDVVL+GILLYALL Sbjct: 179 PGALPQILVGVRFSLGLMWVTLIVAETVSAQAGIGYMTMNAREFLQTDVVLLGILLYALL 238 Query: 259 GKLADTAARALERFWLRWHPGYQ 281 GKLAD +RALERFWLRWHPGYQ Sbjct: 239 GKLADLLSRALERFWLRWHPGYQ 261 >ZycbM [P] COG0600 ABC-type nitrate/sulfonate/bicarbonate transport system, permease component EcZ Escherichia coli O157:H7 EDL933 Length = 263 Score = 315 bits (807), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 165/243 (67%), Positives = 205/243 (84%) Query: 39 WILPLLLLVWWEIAAQAGWLSSRILPEPFAVLKAAWQLSASGELWHHLAVSSGRAAAGFA 98 W LP+ ++ W++A+ GWLS+RILP P V+ A W LSASGELW HLA+SS RA F+ Sbjct: 15 WFLPVGIVTVWQLASSVGWLSTRILPSPEGVVMAFWTLSASGELWQHLAISSWRALIVFS 74 Query: 99 VGAGLGLILGLLSGSLRWAELLLDTTLQMVRNIPALALIPLVILWFGIDETAKLFLVSVG 158 +G LGLILGL+SG RW E LLDT++QM+RN+P LALIPLVILWFGIDE+AK+FLV++G Sbjct: 75 IGGSLGLILGLISGLSRWGERLLDTSIQMLRNVPHLALIPLVILWFGIDESAKIFLVALG 134 Query: 159 VFFPVYLNTFHGIRSVDQGLIEMAKSYGLSGWPLYRDVILPGALPSILVGLRFALGLVWV 218 FP+Y+NT+HGIR++D+GL+EMA+SYGLSG PL+ VILPGALPSI+VG+RFALGL+W+ Sbjct: 135 TLFPIYINTWHGIRNIDRGLVEMARSYGLSGIPLFIHVILPGALPSIMVGVRFALGLMWL 194 Query: 219 LLIVAETISAQAGIGYMTMNAREFLQTDVVLVGILLYALLGKLADTAARALERFWLRWHP 278 LIVAETISA +GIGY+ MNAREFLQTDVV+V I+LYALLGKLAD +A+ LER WLRW+P Sbjct: 195 TLIVAETISANSGIGYLAMNAREFLQTDVVVVAIILYALLGKLADVSAQLLERLWLRWNP 254 Query: 279 GYQ 281 Y Sbjct: 255 AYH 257