BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1477.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BB0538 Non COG                                                         44   2e-04
CT276 [M] COG1664 Integral membrane protein CcmA involved in cel...    42   5e-04
CC1873 [M] COG1664 Integral membrane protein CcmA involved in ce...    38   0.011
XF0404 [M] COG1664 Integral membrane protein CcmA involved in ce...    38   0.014
CPn0425 [M] COG1664 Integral membrane protein CcmA involved in c...    37   0.024

>BB0538 Non COG
          Length = 132

 Score = 43.5 bits (101), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 5/107 (4%)

Query: 57  EESGSKLTVGPNIKVKGEIEDCDTLVVEGKVQATINC-RVVQIAERGAFKGSAEIDLAEI 115
           EES ++  +  N + +G IE    +++EGK++  IN    + + E+   +  AEI    +
Sbjct: 23  EESSTQNVIKKNFEFEGYIESNKPIIIEGKLKGLINSSNSIYLREKADVE--AEIKCQHL 80

Query: 116 --RGEFDGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAGDLQV 160
              G+  G++   + + IY +GK+ G I+  +L I+ G    G+ ++
Sbjct: 81  LNHGKIKGNIEALKTIKIYKTGKLIGNIKTKELFIDSGAMFKGNCEM 127


>CT276 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination Ctr Chlamydia trachomatis
          Length = 194

 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 33/122 (27%), Positives = 65/122 (53%), Gaps = 7/122 (5%)

Query: 55  ATEESG----SKLTVGPNIKVKGEIEDCDTLVVEGKVQATINCR-VVQIAERGAFKGSAE 109
           AT+ES      + T+G  +  KGE+     L ++G  +  +  +  + +  +G  K + E
Sbjct: 71  ATQESSFPEEPETTLGEGVSFKGELTFERLLRIDGTFEGILVSKGKIIVGPQGYVKANIE 130

Query: 110 IDLAEIRGEFDGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAGDLQVGGG--HEQK 167
           ++ A I G  +G++TV  ++ +     VTG I+ G L ++EG +L G + + G   +EQ+
Sbjct: 131 LEEAVIAGVVEGNITVTGRVSLQGRAMVTGDIQAGSLCVDEGVRLCGYVSIQGAPSNEQE 190

Query: 168 DL 169
           ++
Sbjct: 191 EI 192


>CC1873 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination Ccr Caulobacter vibrioides
          Length = 161

 Score = 37.7 bits (86), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/114 (23%), Positives = 52/114 (45%), Gaps = 1/114 (0%)

Query: 43  PYPSSVSHAAPAATEESGSKLTVGPNIKVKGEIEDCDTLVVEGKVQATINCRVVQIAERG 102
           P P + + A PA          +  ++ ++G +     L ++G V+  +    + + E G
Sbjct: 20  PTPMAATPAEPARRAPPKVASLLSADLTIEGGVTGEGELQIDGVVKGDVRVGRLTVGETG 79

Query: 103 AFKGSAEIDLAEIRGEFDGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAG 156
             +GS   +  E+RG   G +T +Q + +Y +  V G I + +L +E G    G
Sbjct: 80  HVEGSVYAEAVEVRGRVVGAITSKQ-VRLYGTSYVDGDITHEQLAMETGAFFQG 132


>XF0404 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination Xfa Xylella fastidiosa 9a5c
          Length = 154

 Score = 37.7 bits (86), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 65  VGPNIKVKGEIEDCDTLVVEGKVQATINCR-----VVQIAERGAFKGSAEIDLAEIRGEF 119
           +GP   + G+I     L VEG +   +         + +AE+G   G     +  I G  
Sbjct: 27  IGPQAVITGDISFSGVLYVEGNIFGKVIADEGVSATLVVAEKGRINGEVRAPVIVINGRL 86

Query: 120 DGDLTVRQKLVIYSSGKVTGKIRYGKLVIEEGGQLAGDL 158
           DGD+    ++ +     V G + Y  + +  G QL G L
Sbjct: 87  DGDVYAADRVELGGGACVHGNVHYKVVEMRVGAQLTGSL 125


>CPn0425 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination Cpn Chlamydophila pneumoniae CWL029
          Length = 195

 Score = 37.0 bits (84), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 32/144 (22%), Positives = 65/144 (45%), Gaps = 3/144 (2%)

Query: 20  FSSAGSSVSSSTGGNVTSVNKAAPYPSSVSHAAPAATEESGSKLTVGPNIKVKGEIEDCD 79
           F +  +S +     N+T  +    + S+    +    EE  +  T+G  +  KGE+    
Sbjct: 43  FDNPKASEARPLNHNLTEESSLPQWSSTPRTESLLPLEEPET--TLGEGVTFKGELAFER 100

Query: 80  TLVVEGKVQATINCR-VVQIAERGAFKGSAEIDLAEIRGEFDGDLTVRQKLVIYSSGKVT 138
            L ++G  +  +  +  + I  +G  K   ++  A I G  +G++TV  K+ +     + 
Sbjct: 101 LLRIDGTFEGILVSKGKIIIGPKGVVKADIQLQEAIIEGVVEGNITVSGKVELRGGAIIK 160

Query: 139 GKIRYGKLVIEEGGQLAGDLQVGG 162
           G I+   L ++EG ++ G L + G
Sbjct: 161 GDIQANTLCVDEGVRILGYLAIAG 184