BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1470.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPy0645 [D] COG2177 Cell division protein Spy Streptococcus pyog...    34   0.095
AF1512 [U] COG0805 Sec-independent protein secretion pathway com...    29   2.6  
TVN1476 [L] COG2189 Adenine specific DNA methylase Mod Tvo Therm...    29   3.3  
SMc01472 [J] COG2264 Ribosomal protein L11 methylase Sme Sinorhi...    28   6.9  

>SPy0645 [D] COG2177 Cell division protein Spy Streptococcus pyogenes M1 GAS
          Length = 312

 Score = 33.9 bits (76), Expect = 0.095,   Method: Composition-based stats.
 Identities = 23/75 (30%), Positives = 40/75 (53%), Gaps = 7/75 (9%)

Query: 13  FTAGRWLARMGLLFD---LAPGMSMNEPYIYQEL--GNLALEPLQPGERKLIGAIFLFGL 67
           F  G W+  +G +     +  G  +   +  QEL   NL++ PL P    LIGA+F+ G+
Sbjct: 236 FFEGAWVGLLGAVLPSLLIYYGYDLVYKHFAQELQRNNLSMYPLDPYVYYLIGALFVIGI 295

Query: 68  AL--LGALYFLQRWL 80
            +  LG++  ++R+L
Sbjct: 296 MIGSLGSVLSMRRYL 310


>AF1512 [U] COG0805 Sec-independent protein secretion pathway component
           TatC Afu Archaeoglobus fulgidus
          Length = 250

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 5/78 (6%)

Query: 7   DAPIASFTAGRWLA-RMGLLFDLAPGMSMNEPYIYQELGNLALEPLQPGERKLIGAIFL- 64
           + PI  F+   W+  R+G  F L   +    PY+  EL   A   L   ER+ + AI + 
Sbjct: 55  ENPIYVFSPIEWVVIRLG--FSLITSLIFLYPYVIYELYLFAKPGLYEHERRFLKAILIP 112

Query: 65  -FGLALLGALYFLQRWLP 81
            +G+ L G  +  +  +P
Sbjct: 113 SYGIFLFGTFFAYKFVVP 130


>TVN1476 [L] COG2189 Adenine specific DNA methylase Mod Tvo Thermoplasma
           volcanium
          Length = 681

 Score = 28.9 bits (63), Expect = 3.3,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 23/43 (53%)

Query: 36  EPYIYQELGNLALEPLQPGERKLIGAIFLFGLALLGALYFLQR 78
           +P++YQ +G+   E  +  + K IG +    L L GAL F  R
Sbjct: 411 KPFLYQSIGDYQKEQFERSQFKRIGDLAHVVLNLYGALPFPMR 453


>SMc01472 [J] COG2264 Ribosomal protein L11 methylase Sme Sinorhizobium
           meliloti
          Length = 291

 Score = 27.7 bits (60), Expect = 6.9,   Method: Composition-based stats.
 Identities = 28/91 (30%), Positives = 39/91 (42%), Gaps = 11/91 (12%)

Query: 3   STDIDAPIASFTAGRWLAR----MGLLFDLAPGM-----SMNEPYIYQELGNLALEPLQP 53
           +TDID PIA+  A     R     GL F  APG      S N P+    + N+   PL  
Sbjct: 179 ATDID-PIATRVAADNARRNGVVTGLTFATAPGFHSTTFSTNGPFDLI-IANILARPLMK 236

Query: 54  GERKLIGAIFLFGLALLGALYFLQRWLPLGS 84
              +L+  +   G  +L  +   QRW  L +
Sbjct: 237 MAPQLVANLAPGGSVILSGILAEQRWKVLAA 267