BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1440.p         (307 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0880 [ET] COG0834 ABC-type amino acid transport/signal transd...    48   3e-05
VCA0978 [ET] COG0834 ABC-type amino acid transport/signal transd...    38   0.027
PA0575_1 [ET] COG0834 ABC-type amino acid transport/signal trans...    37   0.083
AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transd...    36   0.095
NMB0401_1 [E] COG0506 Proline dehydrogenase Nme Neisseria mening...    34   0.44 

>CAC0880 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Cac Clostridium
           acetobutylicum
          Length = 272

 Score = 47.8 bits (112), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 51/168 (30%), Positives = 80/168 (47%), Gaps = 20/168 (11%)

Query: 124 TPEREQYGYFSLPISIFLPLQIIVRKNDVSRFNNVESVQDLLRNRRLVTSVMRGRSYGPQ 183
           T ER+   YFS P  ++  +Q+ V+K +    N+V+S++DL  N + V +V  G ++   
Sbjct: 109 TEERKGKYYFSDPY-VYSGVQLAVKKGN----NSVQSLKDL--NGKTV-AVESGMNFYKA 160

Query: 184 LDALLMANPPQEN---YSDLKEAIGMLLAGHLDYLVESPLVAFDLASHMGHDGALAK--I 238
           ++    AN  + N   YSD       +  G  D LVE  L   D   +  +D  LA   I
Sbjct: 161 IEKY-NANGGKVNIKQYSDYNSIFSEVNLGRADALVEDKLAIMDTIKNSKYDLELAGKPI 219

Query: 239 QTAEQGAITYDRILCPKNAWGQQAIENINEILLAVRGKPFYRRIVEKW 286
           +  E     Y  I   KN   +Q ++ IN+ L A+R     ++I EKW
Sbjct: 220 ENMEN---AYPFI---KNTANKQKVDKINKTLAAMRKDGTLKKISEKW 261


>VCA0978 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Vch Vibrio
           cholerae
          Length = 243

 Score = 38.1 bits (87), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 45/200 (22%), Positives = 85/200 (42%), Gaps = 24/200 (12%)

Query: 39  LLILLTILACPVVLAKDQITWGKHHVPPYMIQEGPRAHQGIFDLILDVLKSRLP-QYQHV 97
           +  L++++ C        IT  +   PP++++   +       L +D++ +    Q   V
Sbjct: 5   IATLISVVLCSFSAWAQTITAAQDPWPPFVMENAQQKG-----LSVDIVTAAFATQGYTV 59

Query: 98  ELDAA-FPRIINEIRNGHHWCFVGALKTPEREQYGYFSLPISIFLPLQI--IVRKNDVSR 154
           E     + R +N+++ G          T ER  Y  +S     +L  Q+  I +  D   
Sbjct: 60  EFTIMPWSRALNDVKEGKIDILPATWFTQERTAYLTYS---DNYLTNQVKFIKKAGDNFE 116

Query: 155 FNNVESVQDLLRNRRLVTSVMRGRSYGPQLDALLMANPP--QENYSDLKEAIGMLLAGHL 212
           F  + S    L  +++   ++RG  YG +     M +P   +   +DLK+ +  L AG +
Sbjct: 117 FAGLAS----LNGKKV--GIVRGYGYGDEF----MNDPSFFRPESTDLKQNLQKLQAGRI 166

Query: 213 DYLVESPLVAFDLASHMGHD 232
           D  VE  LVA  + +  G +
Sbjct: 167 DLAVEDELVAKSIITEAGMN 186


>PA0575_1 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Pae Pseudomonas
           aeruginosa
          Length = 311

 Score = 36.6 bits (83), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 33/131 (25%), Positives = 57/131 (43%), Gaps = 26/131 (19%)

Query: 41  ILLTILAC-------PVVLAKDQITWGKHHV----------PPYMIQEGPRAHQGIFDLI 83
           +LL  LAC        + L  ++  W   H           PP+  ++    +QG+    
Sbjct: 7   VLLLCLACCWPGLAGALTLTPEERAWLAEHPSIRLGMDTSWPPFEYRDEQGRYQGLAAGY 66

Query: 84  LDVLKSRLPQYQHVELDAAFPR----IINEIRNGHHWCFVGALKTPEREQYGYFSLPISI 139
           + +L+ RL     V L    P+    ++ + ++G      G + TPER++Y  F+ P   
Sbjct: 67  IGLLQERL----SVSLTPVEPKTWTQVLEQAKDGRLDLLPGIMATPERQEYLSFTRPYLD 122

Query: 140 FLPLQIIVRKN 150
           F P+ I+ RKN
Sbjct: 123 F-PIIILARKN 132


>AGpA333 [ET] COG0834 ABC-type amino acid transport/signal transduction
           systems, periplasmic component/domain Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 259

 Score = 36.2 bits (82), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 30/110 (27%), Positives = 45/110 (40%), Gaps = 16/110 (14%)

Query: 121 ALKTPEREQYGYFSLPISIFLPLQIIVRKNDVSRFNNVESVQDLLRNRRLVTSVMRGRSY 180
           A  TPER Q   FS P   +  + + V   D  + ++V      L  +++  +       
Sbjct: 100 AGATPERAQQVMFSQP---YAAVSLGVFGGDGEKIDDVSG----LAGKQIAVA------K 146

Query: 181 GPQLDALLMANPPQEN---YSDLKEAIGMLLAGHLDYLVESPLVAFDLAS 227
           G  LD  L  N P+     + D   AI   LAG  DY  E+  +A  +A 
Sbjct: 147 GSTLDTWLTDNAPEVKLVRFEDTPSAIAAFLAGQADYFAENSAIAVKVAD 196


>NMB0401_1 [E] COG0506 Proline dehydrogenase Nme Neisseria meningitidis MC58
          Length = 437

 Score = 33.9 bits (76), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 32/65 (49%), Gaps = 17/65 (26%)

Query: 141 LPLQIIVRK--NDVSRFNNVESVQDLL---------RN------RRLVTSVMRGRSYGPQ 183
            P Q  +R+   D  R N +E+VQD+L         RN      RRLVT V  GR+    
Sbjct: 6   FPAQTALRQAITDAYRRNEIEAVQDMLQRAQMSDEERNAASELARRLVTQVRAGRTKAGG 65

Query: 184 LDALL 188
           +DAL+
Sbjct: 66  VDALM 70