BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1432.p (236 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 154 1e-37 YPO3878 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 152 5e-37 YPO1921 [NU] COG3121 P pilus assembly protein, chaperone PapD Yp... 151 1e-36 STM0339 [NU] COG3121 P pilus assembly protein, chaperone PapD St... 142 8e-34 ECs0144 [NU] COG3121 P pilus assembly protein, chaperone PapD Ec... 139 4e-33 >YPO2944 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 259 Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 86/226 (38%), Positives = 133/226 (58%), Gaps = 6/226 (2%) Query: 6 LSSAGAHASVTMLGTRVIYPASASDQALRFSNPDDHPNLVQVWLDDGHTE-NAAPGPSPF 64 +SS A A++T+ GTRVI+PA+ + ++R +N P LVQVW+DDG T N PF Sbjct: 20 ISSIPAFAAMTISGTRVIFPAAEKEVSIRTNNKGVQPALVQVWVDDGKTNANINSMKLPF 79 Query: 65 MVIPPVFRVEPRGGQVVRLSYVGAALPQDRESLFFLNFLQVPALKADSVGENQLVLTVRS 124 MV PPVFRVEP GQ VR+ Y G ALPQ++ES+F+ N L++PA+K + +N+L L R+ Sbjct: 80 MVTPPVFRVEPGKGQTVRMIYNGMALPQNKESVFWFNMLEIPAVKKEGNTQNKLELAFRT 139 Query: 125 RMKLFYRPLGLDNEEEAARAPDALTFVIEPAGAGAGASIVARNASAYHVVLQQAALLSDG 184 R+K+FYRP L++ A A T V + G G +V N + Y++ ++ Sbjct: 140 RIKVFYRPTSLESNSAAQSAQLKWTLV-DDNQKGRGVKVV--NPTPYYISFDSGSITVGA 196 Query: 185 QPQELASATMIGPF-EELRWPLAQTPADRTGLRLQLRIVNDVGVEI 229 + E+ + M+ PF E++ +P + + ++ +I+ND G I Sbjct: 197 KSVEIIT-DMVPPFSEKMFFPKLKLLGSTSISKMNYKILNDYGAAI 241 >YPO3878 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 243 Score = 152 bits (384), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 80/226 (35%), Positives = 131/226 (57%), Gaps = 10/226 (4%) Query: 3 LAWLSSAGAHASVTMLGTRVIYPASASDQALRFSNPDDHPNLVQVWLDDGHTENAAP--G 60 L +S + A+ASV M G+R+IYPA+AS+ +++ +N D+ PN VQVWLD G E + P G Sbjct: 17 LVAMSLSFANASVVMTGSRIIYPAAASEHSIQLTNNDNFPNAVQVWLDSGD-EKSTPETG 75 Query: 61 PSPFMVIPPVFRVEPRGGQVVRLSYVGAALPQDRESLFFLNFLQVPALKADSVGENQLVL 120 +PF+V PP FR+E GQ +RL Y G+ LP DRES+F+LNFLQ+P + +N++++ Sbjct: 76 KAPFIVTPPFFRIEANSGQTLRLKYTGSGLPTDRESVFYLNFLQIPPVNKVE-KDNKMLV 134 Query: 121 TVRSRMKLFYRPLGLDNEEEAARAPDALTFVIEPAGAGAGASIVARNASAYHVVLQQAAL 180 +R+R+K+FYRP + + + ALTF + G + +N + ++ + + Sbjct: 135 LLRNRIKVFYRPESIIGRVD--QVSTALTFSLRK--QGTNLVLTGKNPTGFYATIASGEI 190 Query: 181 LSDGQPQELASATMIGPFEELRWPLAQTPADRTGLRLQLRIVNDVG 226 +S G + + MI P ++ W + + + I+ND G Sbjct: 191 VS-GSIKLKVKSNMIAPMSQVEWVIPNASVSSSA-TINFLIMNDFG 234 >YPO1921 [NU] COG3121 P pilus assembly protein, chaperone PapD Ype Yersinia pestis Length = 214 Score = 151 bits (381), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 126/237 (53%), Gaps = 37/237 (15%) Query: 1 MTLAWLSSAGAHASVTMLGTRVIYPASASDQALRFSNPDDHPNLVQVWLDDGHTENAAPG 60 M L S ASV M GTR+IYP + ++ L+ SN DDHPNLVQ+W+DDG+ + ++P Sbjct: 13 MLLLTSVSLSVQASVVMTGTRIIYPEGSREKVLQLSNKDDHPNLVQLWMDDGNNQ-SSPS 71 Query: 61 PS--PFMVIPPVFRVEPRGGQVVRLSYVGAALPQDRESLFFLNFLQVPALKADSVGENQL 118 S PF + P +FR+E GQVVRL+Y+ LP++RES+F+LNFLQ+PALKAD++GE ++ Sbjct: 72 KSDVPFALTPQIFRMEANSGQVVRLTYIARNLPKNRESVFYLNFLQIPALKADTLGE-KI 130 Query: 119 VLTVRSRMKLFYRPLGLDNEEEAARAPDALTFVIEPAGAGAGASIVARNASAYHVVLQQA 178 +T+ + G I N + Y++ L+ A Sbjct: 131 SVTLDTT---------------------------------TGNKIKVHNPTGYYISLRDA 157 Query: 179 ALLSDGQPQELASATMIGPFEELRWPLAQTPADRTGLRLQLRIVNDVGVEIVRDYPL 235 ++S+G+ A++ M P L + G L L +VND G I +Y L Sbjct: 158 KIVSNGKTVSFATSEMFAPDSTTDLALPIGIKAKKGELLILNVVNDYGATIPNNYYL 214 >STM0339 [NU] COG3121 P pilus assembly protein, chaperone PapD Sty Salmonella typhimurium LT2 Length = 253 Score = 142 bits (357), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 129/238 (54%), Gaps = 20/238 (8%) Query: 6 LSSAGAHASVTMLGTRVIYPASASDQALRFSNPDDHPNLVQVWLDDGHTENAAPGPS--P 63 L + + ASVT+LG+R+IYP++AS ++ N D P +VQ W DDG + S P Sbjct: 21 LPATASWASVTILGSRIIYPSTASSVDVQLKNNDAIPYIVQTWFDDGDMNTSPENSSAMP 80 Query: 64 FMVIPPVFRVEPRGGQVVRLSYVGA-ALPQDRESLFFLNFLQVP--ALKADSVGENQLVL 120 + PPVFR++P+ GQVVR+ Y LPQDRES+F+ N LQVP + +DS G+N++++ Sbjct: 81 LIATPPVFRIQPKAGQVVRVIYNNTKKLPQDRESVFWFNVLQVPPTNIGSDS-GQNKMLV 139 Query: 121 TVRSRMKLFYRPLGLDNEEEAARAPDALTFVIEPAGAGAGAS-IVARNASAYHVVLQQAA 179 +RSR+KLFYRP GL + A+ I+ G+G S IV N + L Sbjct: 140 MLRSRIKLFYRPDGLGKPDNLAKK-----LQIKTVNKGSGKSGIVIVNPQPWFASLSNLN 194 Query: 180 LLSDGQPQELASATMIGPFEELRWPLAQTPADRT----GLRLQLRIVNDVGVEIVRDY 233 + +G L A MI PF W L P R+ + + +VND+G I Y Sbjct: 195 VKVNGASYNL-DADMIAPFSSQTWWL---PGKRSLKSFSGTVTVTLVNDLGARISESY 248 >ECs0144 [NU] COG3121 P pilus assembly protein, chaperone PapD Ecs Escherichia coli O157:H7 Length = 241 Score = 139 bits (351), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 86/228 (37%), Positives = 126/228 (55%), Gaps = 14/228 (6%) Query: 6 LSSAGAHASVTMLGTRVIYPASASDQALRFSNPDDHPNLVQVWLDDGHTENAAPG--PSP 63 L+SA A A + + GTR+IY A D +R N + P L+Q WLD G +NA P P Sbjct: 18 LASAPAFADIIISGTRIIYNADKKDVNVRLENKGNRPLLIQNWLDTGD-DNADPSQIKVP 76 Query: 64 FMVIPPVFRVEPRGGQVVRLSYVGA-ALPQDRESLFFLNFLQVPALKADS-VGENQLVLT 121 F PPV RVEP+ GQ V++ Y GA ALP+DRES+++ N L+VP D+ +N L L Sbjct: 77 FTATPPVSRVEPKRGQTVKVMYTGATALPKDRESVYWFNVLEVPPKPKDAEADKNLLQLA 136 Query: 122 VRSRMKLFYRPLGLDNEEEAARAPDALTFVIEPAGAGAGASIVARNASAYHVVLQQAALL 181 R+R+KLFYRP GL + E A AP +T+ + A + A N + Y+V + L Sbjct: 137 FRTRIKLFYRPSGL--QGEPAEAPAKITWKLN------NAQLQANNPTPYYVSFNEVKLE 188 Query: 182 SDGQPQELASATMIGPFEELRWPLAQTPADRTGLRLQLRIVNDVGVEI 229 S G+ + S +M+ PF + + + P + ++ + +ND G I Sbjct: 189 SGGKTYNVNS-SMVTPFSQASFGVTSLPGSVSSGKVVFKAINDFGGNI 235