BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1429.p (214 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSp1621 [TK] COG2197 Response regulator containing a CheY-like r... 216 3e-56 YPO1218 [TK] COG2197 Response regulator containing a CheY-like r... 123 4e-28 STM2270 [TK] COG2197 Response regulator containing a CheY-like r... 121 9e-28 rcsB [TK] COG2197 Response regulator containing a CheY-like rece... 121 9e-28 ECs3106 [TK] COG2197 Response regulator containing a CheY-like r... 121 9e-28 >RSp1621 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Rso Ralstonia solanacearum Length = 219 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 119/212 (56%), Positives = 151/212 (71%), Gaps = 1/212 (0%) Query: 3 IRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDDP 62 I+V IADD+P+VL G ++L PDI + F+ E+I QL+ L + VDVLLCDY F+ DP Sbjct: 4 IKVGIADDHPIVLLGATSMLKDHPDIEVLFTCETIEQLLKQLAEHPVDVLLCDYEFESDP 63 Query: 63 QADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYC 122 QADG+ LL+RLRR P +++ LSAH+ P I+S+ L LGA GFIGKSR+DF NL A+ Sbjct: 64 QADGLHLLQRLRRLVPDTRILLLSAHSTPSIVSATLGLGASGFIGKSRADFGNLAAAVRK 123 Query: 123 VQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKRS 182 V G +Y+P SLS+ALL Y H G+ LS RE+ VA+M G++IG IA+RLKRS Sbjct: 124 VAGGSLYVPGSLSAALLSARYGKHG-MVGVEALSTREVIVAQMTADGLTIGEIADRLKRS 182 Query: 183 PKTISNQKVAAMKKLGVSNDVELSRVFQTLDN 214 PKTISNQKVAAMKKLGV NDVEL+ V + L Sbjct: 183 PKTISNQKVAAMKKLGVKNDVELAAVLRELSG 214 >YPO1218 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ype Yersinia pestis Length = 217 Score = 123 bits (308), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 5/203 (2%) Query: 3 IRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDDP 62 + V IADD+P+VL GI L + + E T L+ L + +VL+ D + D Sbjct: 4 LNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLSKLDANVLITDLSMPGDK 63 Query: 63 QADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYC 122 DGI L+K ++RH+P + +I L+ + P I+SS L+L G + K + +LP+A+ Sbjct: 64 YGDGITLIKYIKRHYPDLAIIVLTMNNNPAILSSVLDLDIDGIVLKQGAP-ADLPKALAA 122 Query: 123 VQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKRS 182 +Q G+ + P+S++ L ++ G +LS +E V R+ +G + IA +L RS Sbjct: 123 LQKGKKFTPESVAKL----LEKISANGYGDKRLSPKESEVLRLFAEGFLVTEIARKLNRS 178 Query: 183 PKTISNQKVAAMKKLGVSNDVEL 205 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMLKLGVDNDIAL 201 >STM2270 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sty Salmonella typhimurium LT2 Length = 216 Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 5/203 (2%) Query: 3 IRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDDP 62 + V IADD+P+VL GI L + + E T L+ L + VL+ D + D Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 63 QADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYC 122 DGI L+K ++RH P++ +I L+ + P I+S+ L+L G + K + +LP+A+ Sbjct: 64 YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-TDLPKALAA 122 Query: 123 VQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKRS 182 +Q G+ + P+S+S L ++ G +LS +E V R+ +G + IA++L RS Sbjct: 123 LQKGKKFTPESVSRL----LEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRS 178 Query: 183 PKTISNQKVAAMKKLGVSNDVEL 205 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMMKLGVENDIAL 201 >rcsB [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Eco Escherichia coli K12 Length = 216 Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 5/203 (2%) Query: 3 IRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDDP 62 + V IADD+P+VL GI L + + E T L+ L + VL+ D + D Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 63 QADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYC 122 DGI L+K ++RH P++ +I L+ + P I+S+ L+L G + K + +LP+A+ Sbjct: 64 YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-TDLPKALAA 122 Query: 123 VQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKRS 182 +Q G+ + P+S+S L ++ G +LS +E V R+ +G + IA++L RS Sbjct: 123 LQKGKKFTPESVSRL----LEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRS 178 Query: 183 PKTISNQKVAAMKKLGVSNDVEL 205 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMMKLGVENDIAL 201 >ECs3106 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Ecs Escherichia coli O157:H7 Length = 216 Score = 121 bits (304), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 72/203 (35%), Positives = 114/203 (56%), Gaps = 5/203 (2%) Query: 3 IRVAIADDYPVVLRGIEAILAPCPDITLAFSAESITQLMACLEQAAVDVLLCDYAFDDDP 62 + V IADD+P+VL GI L + + E T L+ L + VL+ D + D Sbjct: 4 MNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNLPKLDAHVLITDLSMPGDK 63 Query: 63 QADGIDLLKRLRRHHPAVKVIFLSAHAQPHIISSALELGAVGFIGKSRSDFVNLPQAIYC 122 DGI L+K ++RH P++ +I L+ + P I+S+ L+L G + K + +LP+A+ Sbjct: 64 YGDGITLIKYIKRHFPSLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAP-TDLPKALAA 122 Query: 123 VQNGQVYLPQSLSSALLGNLYRVHTRQSGLGQLSERELTVARMICQGMSIGTIAERLKRS 182 +Q G+ + P+S+S L ++ G +LS +E V R+ +G + IA++L RS Sbjct: 123 LQKGKKFTPESVSRL----LEKISAGGYGDKRLSPKESEVLRLFAEGFLVTEIAKKLNRS 178 Query: 183 PKTISNQKVAAMKKLGVSNDVEL 205 KTIS+QK +AM KLGV ND+ L Sbjct: 179 IKTISSQKKSAMMKLGVENDIAL 201