BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1419.p         (169 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3905 Non COG                                                         55   5e-08
PA3293 Non COG                                                         42   7e-04
VC1417 Non COG                                                         36   0.048
RSc3144 Non COG                                                        33   0.41 
RSc2661 [K] COG1396 Predicted transcriptional regulators Rso Ral...    32   0.96 

>PA3905 Non COG
          Length = 175

 Score = 55.5 bits (132), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 72/154 (46%), Gaps = 10/154 (6%)

Query: 8   SRLE-TLHNSMPALRLYALVDGVQYQAQLCKRFQSSSGLFP---LFARTPDAALAHAGPW 63
           SRL+  L    P  RL+AL DG +Y   L  R + ++G      L A +    +AHAGP 
Sbjct: 2   SRLQPALAAPTPDSRLFALADGARY-LTLDTRLEKAAGEIRSRWLLAGSELDEIAHAGPV 60

Query: 64  LVDTAIANHVS-----MAELITLERDAPALTWLIASQDLEGLGQLLQLRLDVNLPDGRSA 118
           L++   +  +S     +  L   +R +P  +WL +    E L +     L   +PDGR A
Sbjct: 61  LIEFMDSAPLSSSGEFLGWLRDWDRRSPMASWLWSRASFENLAKHFAGLLFTRMPDGRRA 120

Query: 119 LLRFWDPRVLVNLARTLDAAQREEFFGHIHEWHM 152
           LLR++ P V   L + + A Q  +    +  W +
Sbjct: 121 LLRYYSPEVRRALEQVMTARQWTQVMAPLERWQV 154


>PA3293 Non COG
          Length = 271

 Score = 42.0 bits (97), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 38/133 (28%), Positives = 56/133 (42%), Gaps = 1/133 (0%)

Query: 38  RFQSSSGLFPLFARTPDAALAHAGPWLVDTAIANHVSMAELITLERDAPALTWLIASQDL 97
           R      LF L  +TP+AALA  GP L+     +   + EL+        L  L +   L
Sbjct: 45  RQSDPPALFKLLEQTPEAALADEGPLLLRLEDGHAAWLDELLERIDCRRHLMLLFSPWPL 104

Query: 98  EGLGQLLQLRLDVNLPDGRSA-LLRFWDPRVLVNLARTLDAAQREEFFGHIHEWHMLHEG 156
             LG+ L+         GRS+ +LRF++P + + ++  LD  Q       +  WH L   
Sbjct: 105 PRLGEHLRSCTQAEWNQGRSSGVLRFYEPGLFMAVSDMLDPRQSCYLHAPVSSWHWLDRD 164

Query: 157 RRVCIRRHHADAH 169
            R      H  AH
Sbjct: 165 GRPRALAGHYQAH 177


>VC1417 Non COG
          Length = 286

 Score = 35.8 bits (81), Expect = 0.048,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 35/77 (45%), Gaps = 21/77 (27%)

Query: 114 DGRSALLRFWDPRVLVNLARTLDAAQREEFFGHIHEWHML--HEGRRV------------ 159
           +G   L RF+D +V+V +   +D  ++ +F G I++  +   HE  R+            
Sbjct: 113 EGEEVLFRFYDRQVIVPMLERMDEIEKNQFLGKINQLVVFDSHEKNRLVSFTNTSDAQFT 172

Query: 160 -------CIRRHHADAH 169
                   I+RHH +AH
Sbjct: 173 AKKTTWWVIKRHHLEAH 189


>RSc3144 Non COG
          Length = 301

 Score = 32.7 bits (73), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 43/139 (30%), Positives = 60/139 (43%), Gaps = 8/139 (5%)

Query: 18  PALRLYALVDGVQYQAQLCKRFQSSSGLFPLFARTPDA-ALAHAGPWLVD----TAIANH 72
           P +  +ALVDG   Q  +   F S +G  PL+ R      L  A P+LV     T    H
Sbjct: 25  PQVHWFALVDGAFDQDGV--PFVSPAGHVPLYGRANTLHDLLPAPPYLVPLDRRTGADLH 82

Query: 73  VSMAELITLERDAPALTWLIASQDLEGLGQL-LQLRLDVNLPDGRSALLRFWDPRVLVNL 131
             +  L T  +  P L++L + +  + L +L L     V + +G   LLRF D RVL  L
Sbjct: 83  AMVTALGTHCQGRPMLSFLASWKSADELVRLWLPCLQPVVVDEGARHLLRFADTRVLSAL 142

Query: 132 ARTLDAAQREEFFGHIHEW 150
              LD A        +  W
Sbjct: 143 PGALDPAAWARLTAPLMHW 161


>RSc2661 [K] COG1396 Predicted transcriptional regulators Rso Ralstonia
           solanacearum
          Length = 111

 Score = 31.6 bits (70), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)

Query: 66  DTAIANHVSMAELITLERDAPALTWLIASQDLEGLGQLLQLRLDVNLPDGRSALL 120
           D A +  VS + ++ +ER A  + W    Q LEGLG     R+ V++P+  S LL
Sbjct: 28  DAAGSVGVSESFMVKVERGAETVQWGKLFQILEGLG----ARVTVDIPEASSELL 78