BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1346.p         (84 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0933 [J] COG0228 Ribosomal protein S16 Rso Ralstonia solanace...   139   1e-33
NMB0592 [J] COG0228 Ribosomal protein S16 Nme Neisseria meningit...   120   7e-28
NMA0795 [J] COG0228 Ribosomal protein S16 NmA Neisseria meningit...   120   7e-28
YPO3295 [J] COG0228 Ribosomal protein S16 Ype Yersinia pestis         112   2e-25
STM2676 [J] COG0228 Ribosomal protein S16 Sty Salmonella typhimu...   109   1e-24

>RSc0933 [J] COG0228 Ribosomal protein S16 Rso Ralstonia solanacearum
          Length = 84

 Score =  139 bits (351), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 66/84 (78%), Positives = 75/84 (89%)

Query: 1  MVVIRLARGGAKKRPFYNIVATDSRNRRDGRFIERIGFYNPVASGKEETVRIAADRLAHW 60
          MVVIRLARGG+K RPF+NIVATDSRNRRDGRFIER+GFYNP+A+  EE +RIA DRL++W
Sbjct: 1  MVVIRLARGGSKNRPFFNIVATDSRNRRDGRFIERVGFYNPLATEGEEGLRIAQDRLSYW 60

Query: 61 QGVGAQLSPTVARLVAEAGSKAAA 84
          QGVGAQLSPTVARLV +   KAAA
Sbjct: 61 QGVGAQLSPTVARLVKQGAKKAAA 84


>NMB0592 [J] COG0228 Ribosomal protein S16 Nme Neisseria meningitidis MC58
          Length = 81

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 66/77 (85%)

Query: 1  MVVIRLARGGAKKRPFYNIVATDSRNRRDGRFIERIGFYNPVASGKEETVRIAADRLAHW 60
          MVVIRLARGG+K RPFYN++ TDSR+RRDGRFIER+GFYNPVA+ K+E VR+ ADRL HW
Sbjct: 1  MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVANEKQERVRLNADRLNHW 60

Query: 61 QGVGAQLSPTVARLVAE 77
             GAQ+S +VA+L+ E
Sbjct: 61 IAQGAQVSDSVAKLIKE 77


>NMA0795 [J] COG0228 Ribosomal protein S16 NmA Neisseria meningitidis
          Z2491
          Length = 81

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 54/77 (70%), Positives = 66/77 (85%)

Query: 1  MVVIRLARGGAKKRPFYNIVATDSRNRRDGRFIERIGFYNPVASGKEETVRIAADRLAHW 60
          MVVIRLARGG+K RPFYN++ TDSR+RRDGRFIER+GFYNPVA+ K+E VR+ ADRL HW
Sbjct: 1  MVVIRLARGGSKHRPFYNVIVTDSRSRRDGRFIERVGFYNPVANEKQERVRLNADRLNHW 60

Query: 61 QGVGAQLSPTVARLVAE 77
             GAQ+S +VA+L+ E
Sbjct: 61 IAQGAQVSDSVAKLIKE 77


>YPO3295 [J] COG0228 Ribosomal protein S16 Ype Yersinia pestis
          Length = 82

 Score =  112 bits (280), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 51/82 (62%), Positives = 64/82 (78%)

Query: 1  MVVIRLARGGAKKRPFYNIVATDSRNRRDGRFIERIGFYNPVASGKEETVRIAADRLAHW 60
          MV IRLARGGAKKRPFY +V TDSRN RDGRFIER+GF+NP+ASG+ E +R+  DR+ HW
Sbjct: 1  MVTIRLARGGAKKRPFYQVVVTDSRNARDGRFIERVGFFNPIASGQAEALRLDLDRIEHW 60

Query: 61 QGVGAQLSPTVARLVAEAGSKA 82
           G+GA +S  V+ L+ +A   A
Sbjct: 61 IGLGATVSDRVSVLIKDAKKAA 82


>STM2676 [J] COG0228 Ribosomal protein S16 Sty Salmonella typhimurium LT2
          Length = 82

 Score =  109 bits (273), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/77 (66%), Positives = 60/77 (77%)

Query: 1  MVVIRLARGGAKKRPFYNIVATDSRNRRDGRFIERIGFYNPVASGKEETVRIAADRLAHW 60
          MV IRLAR GAKKRPFY +V TDSRN R+GRFIER+GF+NP+AS KEE  R+  DR+AHW
Sbjct: 1  MVTIRLARHGAKKRPFYQVVVTDSRNARNGRFIERVGFFNPIASEKEEGTRLDLDRIAHW 60

Query: 61 QGVGAQLSPTVARLVAE 77
           G GA +S  VA L+ E
Sbjct: 61 VGQGATISDRVAALIKE 77