BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1336.p (231 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl383 [E] COG0765 ABC-type amino acid transport system, permeas... 241 1e-63 SMa0079 [E] COG0765 ABC-type amino acid transport system, permea... 212 6e-55 SMa0501 [E] COG0765 ABC-type amino acid transport system, permea... 205 7e-53 AGc2567 [E] COG0765 ABC-type amino acid transport system, permea... 193 3e-49 AGc2584 [E] COG0765 ABC-type amino acid transport system, permea... 189 4e-48 >AGl383 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 234 Score = 241 bits (614), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 124/232 (53%), Positives = 169/232 (72%), Gaps = 4/232 (1%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIF-GAIISIHGSRPARLAVTS 59 M Y FQF + Q+ ++LL G LTI+LS LS++ G A GI ++ SI+G R+ V Sbjct: 1 MSYTFQFGALAQYQNELLSGIWLTIKLSVLSIVLGCAFGILLASLRSINGG-IVRIIVDG 59 Query: 60 YVELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPS 119 YVE+IR+TPFLVQLFI++FGLP +G +V A+ AAL+ MT+NL AYSTEI+RAG+ A+H S Sbjct: 60 YVEVIRNTPFLVQLFIVYFGLPGLGFRVGADTAALIGMTINLAAYSTEIIRAGIEAVHKS 119 Query: 120 QIEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANL 179 QIEA +AL T++Q+ RHV++ PA+ KVYP+L SQF LMMLASSI SAIS EL A A Sbjct: 120 QIEAGEALGFTKYQIYRHVIIVPAIAKVYPSLCSQFVLMMLASSICSAISTHELAAAAAF 179 Query: 180 LDAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR--RRLGVARPR 229 ++++T+RSFE+Y+VV ++Y+ LAL RL L+G+ +F RR R+ A P Sbjct: 180 VESQTYRSFEVYIVVTLIYLALALSLRLILALVGMWLFGRRVARKTMTALPE 231 >SMa0079 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 222 Score = 212 bits (539), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 106/216 (49%), Positives = 148/216 (68%) Query: 3 YDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSYVE 62 Y+F FA + DQLLVGA LT+RLS +M+ GL V +F A G R + Y+E Sbjct: 2 YEFNFAPVLASFDQLLVGAWLTVRLSCAAMLIGLVVSVFCAWGKTAGPAILRHVIDGYIE 61 Query: 63 LIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQIE 122 +IR+TPFLVQ+F IFFG+PS+G+++ N AAL+A+ VN GAY TEI+RAG+ +IH Q+E Sbjct: 62 IIRNTPFLVQIFFIFFGMPSLGLRLSPNSAALLALVVNFGAYGTEIIRAGIESIHKGQVE 121 Query: 123 AAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLLDA 182 A AL ++R Q+ R+VV+ PAL VYPAL SQF +ML +S+VS ISA++L A N L + Sbjct: 122 AGWALGLSRPQIFRYVVMKPALRTVYPALTSQFIYLMLNTSVVSVISADDLAAAGNDLQS 181 Query: 183 ETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFK 218 TF SFE+Y+ V ++Y+ L++ F F+ + FK Sbjct: 182 ATFASFEVYIAVTLIYLALSVGFSALFYALEKAAFK 217 >SMa0501 [E] COG0765 ABC-type amino acid transport system, permease component Sme Sinorhizobium meliloti Length = 228 Score = 205 bits (521), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 103/222 (46%), Positives = 154/222 (69%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSY 60 M Y FQF + +L Q++ G LTI LS + + G+A+GIF A++S S RL V Y Sbjct: 1 MDYTFQFGPLLNYLPQIVSGLWLTIGLSFVGIFGGIALGIFCAVMSTLSSPIPRLLVRLY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VE++R+TP LVQ+F+IFFGLP+IG+++ + +A+ +N G Y EIVR G+ A H SQ Sbjct: 61 VEVVRNTPLLVQIFVIFFGLPNIGIRLSPLTSVFIALVLNNGGYVAEIVRGGIEATHRSQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EAA++L ++ +Q +R+V+L PALEKV+ + SQ L+ML++S+VSAI E+LT A + Sbjct: 121 VEAAESLGLSYFQTLRYVILPPALEKVFTPVVSQCVLLMLSTSLVSAIGVEDLTGAAMIA 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRRRR 222 +ETFR+ EIYLVV ++Y++L +FR + GL++F R RR Sbjct: 181 SSETFRTMEIYLVVAMVYVVLNFVFRAVLNVAGLMIFTRSRR 222 >AGc2567 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 223 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 107/220 (48%), Positives = 155/220 (70%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSY 60 M+Y F F ++ ++ Q+ G +T+ L A+ + G+A+GIF A + G + R V +Y Sbjct: 1 MKYTFDFGWLLEYYPQIAKGIAITLELIAIGGVLGIALGIFCAWVRALGPKWLRPPVATY 60 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VELIR+TPFL+QLF IFFGLPS+G+Q+ AA +AM VNLGAYS EI+RAG+ A Q Sbjct: 61 VELIRNTPFLIQLFFIFFGLPSLGLQLSELSAANIAMVVNLGAYSCEIIRAGIQATPKGQ 120 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 EA +LAMTR++ RHVVL P+L++++PAL+SQ ++ML SS+VS I+AE+LT AN + Sbjct: 121 FEAGASLAMTRFETFRHVVLVPSLQRIWPALSSQVVIVMLGSSVVSQIAAEDLTFAANFI 180 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR 220 + TFR+FE Y+V V+Y++LA+L R + G ++F RR Sbjct: 181 QSRTFRAFEAYMVSTVIYLVLAILLRQLLVMGGNLIFPRR 220 >AGc2584 [E] COG0765 ABC-type amino acid transport system, permease component Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 270 Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 106/220 (48%), Positives = 151/220 (68%) Query: 1 MQYDFQFAFIFQHLDQLLVGALLTIRLSALSMICGLAVGIFGAIISIHGSRPARLAVTSY 60 M + F +F D + G LLTI LSA +++ G + + + G+ R V SY Sbjct: 37 MNFSLHFEAVFAESDLIWRGILLTIGLSATAIVLGTMIAVALVAMRSLGNGTIRFCVDSY 96 Query: 61 VELIRSTPFLVQLFIIFFGLPSIGVQVDANIAALVAMTVNLGAYSTEIVRAGMMAIHPSQ 120 VEL+R+TPFLVQLF++FFGLP +G ++ AAL AMT+NL AY+TEI+RAG+ +IH SQ Sbjct: 97 VELLRNTPFLVQLFMVFFGLPLVGFRMSGTQAALFAMTLNLSAYATEIIRAGVESIHRSQ 156 Query: 121 IEAAQALAMTRWQVIRHVVLTPALEKVYPALASQFTLMMLASSIVSAISAEELTATANLL 180 +EA +L+++R QV R+VV+ PA K++PAL+SQF LM+LASSI S IS EL+ A+++ Sbjct: 157 VEAGLSLSLSRLQVFRYVVMKPAFAKIWPALSSQFVLMLLASSICSFISVPELSGAASII 216 Query: 181 DAETFRSFEIYLVVMVLYILLALLFRLAFWLIGLVVFKRR 220 + TFRSFE Y+VV V+Y+LLAL ++ G +F+RR Sbjct: 217 EQRTFRSFETYIVVTVIYLLLALALKIILAWFGHWLFRRR 256