BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1324.p         (107 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0282 [R] COG2329 Uncharacterized enzyme involved in biosynthe...   132   2e-31
BS_yqjZ [R] COG2329 Uncharacterized enzyme involved in biosynthe...   111   4e-25
PA2268_2 [R] COG2329 Uncharacterized enzyme involved in biosynth...   107   5e-24
AGc2463 [R] COG2329 Uncharacterized enzyme involved in biosynthe...    48   6e-06
mll4602 Non COG                                                        45   6e-05

>RSc0282 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides Rso Ralstonia solanacearum
          Length = 127

 Score =  132 bits (332), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 65/108 (60%), Positives = 77/108 (71%), Gaps = 7/108 (6%)

Query: 4   AVTGDVPYYAVIFTSLRTEGDHGYGQMADAMVQAASRQPGFLGMESAREE-------VGI 56
           A T   PYYAVIF+SLRT+GD+GYG MA+ MV+ A   PGFLG+ES R+E        GI
Sbjct: 18  AHTPHAPYYAVIFSSLRTDGDNGYGAMAERMVELARTMPGFLGIESVRDEEAVTQGRPGI 77

Query: 57  TVSYWESLEAIAAWKRDLDHQMAQRLGREQWYQAYKTRICKVERDYAF 104
           TVSYW SLEAI  WK   +H++AQ+ GREQWY AY  RICK+E DY F
Sbjct: 78  TVSYWSSLEAIHEWKNQAEHRVAQQRGREQWYAAYHLRICKIEYDYGF 125


>BS_yqjZ [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides Bsu Bacillus subtilis
          Length = 114

 Score =  111 bits (278), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 52/101 (51%), Positives = 71/101 (70%), Gaps = 2/101 (1%)

Query: 6   TGDVPYYAVIFTSLRTEGDHGYGQMADAMVQAASRQPGFLGMESAREE--VGITVSYWES 63
           T + PYYAVIF+S+++E D GYG+ A+ MV  A+ QPGFLG+ES RE    GITVSYW+S
Sbjct: 8   TPEPPYYAVIFSSVKSENDTGYGETAERMVSLAADQPGFLGVESVREADGRGITVSYWDS 67

Query: 64  LEAIAAWKRDLDHQMAQRLGREQWYQAYKTRICKVERDYAF 104
           ++AI  W+   +HQ A+  GR  WY++Y  R+ KV+R   F
Sbjct: 68  MDAINHWRHHTEHQAAKEKGRSVWYESYAVRVAKVDRQRLF 108


>PA2268_2 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides Pae Pseudomonas aeruginosa
          Length = 110

 Score =  107 bits (268), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/97 (54%), Positives = 67/97 (69%), Gaps = 2/97 (2%)

Query: 10  PYYAVIFTSLRTEGDHGYGQMADAMVQAASRQPGFLGMESAR--EEVGITVSYWESLEAI 67
           PYYAVIF+S R+  D GY + A+ M++ ASRQPG+LG+ES R     GITVSYW+S  AI
Sbjct: 1   PYYAVIFSSHRSAVDDGYAEAAERMLELASRQPGYLGVESVRGANGFGITVSYWDSEAAI 60

Query: 68  AAWKRDLDHQMAQRLGREQWYQAYKTRICKVERDYAF 104
            AW R  +H+ AQ  GR  WY  +  RI +VER+YAF
Sbjct: 61  RAWSRHAEHRDAQARGRHDWYAGFSARIARVEREYAF 97


>AGc2463 [R] COG2329 Uncharacterized enzyme involved in biosynthesis of
           extracellular polysaccharides Atu Agrobacterium
           tumefaciens strain C58 (Cereon)
          Length = 121

 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)

Query: 13  AVIFTSLRTEGD-HGYGQMADAMVQAASRQPGFLGMES----AREEVGITVSYWESLEAI 67
           AVIF     EG+   Y  +A  +        GFL +E     +  E  +++S++   +A+
Sbjct: 3   AVIFEVWPAEGEKQHYLDIAAGLRAELETIDGFLSIERFQSISNPEKMLSLSFFRDEQAV 62

Query: 68  AAWKRDLDHQMAQRLGREQWYQAYKTRICKVERDYAFV 105
            AW+  L H+ AQ LGR   +  Y+ RI  V RDY  +
Sbjct: 63  RAWRNTLPHRTAQALGRSGVFSDYRLRIAHVIRDYGLL 100


>mll4602 Non COG
          Length = 114

 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 30/50 (60%)

Query: 56  ITVSYWESLEAIAAWKRDLDHQMAQRLGREQWYQAYKTRICKVERDYAFV 105
           +++S+W   EA+ AW+   +H+ AQ+ GR   +  Y+ RI  V RDY  +
Sbjct: 51  LSLSFWRDEEAVKAWRNTEEHRQAQQAGRGGIFAGYRLRIAHVVRDYGLM 100