BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1305.p (434 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc3059 [GEPR] COG0477 Permeases of the major facilitator superf... 610 e-174 RSc3060 [GEPR] COG0477 Permeases of the major facilitator superf... 579 e-165 STM0689 [GEPR] COG0477 Permeases of the major facilitator superf... 577 e-164 PA5476 [GEPR] COG0477 Permeases of the major facilitator superfa... 556 e-158 PA4343 [GEPR] COG0477 Permeases of the major facilitator superfa... 295 1e-79 >RSc3059 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso Ralstonia solanacearum Length = 431 Score = 610 bits (1573), Expect = e-174, Method: Compositional matrix adjust. Identities = 289/415 (69%), Positives = 347/415 (83%) Query: 10 RHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFGAGFLMR 69 SK ++ RV SGNFLEM+DF +YG+YA I+ TFFP+DNEF+SL+L+ TFG GFLMR Sbjct: 7 NESKARSIFRVVSGNFLEMYDFMVYGYYAKAIADTFFPADNEFLSLMLSLVTFGVGFLMR 66 Query: 70 PLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLLQGF 129 PLGA+ILG+YIDR GRR GLI+TL +MA GTLLIA VPGYATIG+AAP+LVL GRLLQGF Sbjct: 67 PLGALILGAYIDRHGRRAGLILTLGLMACGTLLIALVPGYATIGLAAPLLVLIGRLLQGF 126 Query: 130 SAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSPLQISEWG 189 SAGVELGGVSVYLAE++TPG KGF+VSWQSASQQ A+M +AL+G L+S LSP ++ EWG Sbjct: 127 SAGVELGGVSVYLAEISTPGRKGFFVSWQSASQQVAVMFAALLGVLLSFQLSPKEMGEWG 186 Query: 190 WRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGEIMTSIGQNWKIVVAGMMMVVM 249 WR+PF +GC+IVP +F+IRRSLQETEEF RK P+ GEI S+G+NW++V AG ++VVM Sbjct: 187 WRVPFLVGCLIVPFLFLIRRSLQETEEFKQRKHRPALGEIFRSMGENWRLVGAGTLLVVM 246 Query: 250 TTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVGRRPVLVA 309 TTVSFYLIT YTPTFGK+VL LS DSLIVT CVG SNF WLP+MG++SDR+GRRP+L+ Sbjct: 247 TTVSFYLITAYTPTFGKSVLHLSNLDSLIVTLCVGASNFFWLPVMGSVSDRIGRRPLLIT 306 Query: 310 FTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPAHVRTVGF 369 FT LTLLTAYP M WL+++ SF LL ELWLSFLY SYNGA VV LTE+MP VRT GF Sbjct: 307 FTALTLLTAYPAMQWLIAEPSFGRLLAVELWLSFLYGSYNGAMVVTLTEIMPPAVRTTGF 366 Query: 370 SLAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLIATLVLYRGKG 424 SLAYSLATAIFGGFTP ++TWLI +G+KA PG W+SFAA+CGL+ATL++ + G Sbjct: 367 SLAYSLATAIFGGFTPAIATWLIHATGNKAMPGLWLSFAAICGLVATLIVVKPAG 421 >RSc3060 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso Ralstonia solanacearum Length = 433 Score = 579 bits (1492), Expect = e-165, Method: Compositional matrix adjust. Identities = 276/419 (65%), Positives = 337/419 (80%) Query: 10 RHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFGAGFLMR 69 SK + RV SGNFLEMFDF +YG+YA+ I+ TFFP+ N F+SL+L+ TFGAGFLMR Sbjct: 7 NESKARAIFRVVSGNFLEMFDFMVYGYYATAIAATFFPAGNAFLSLMLSLMTFGAGFLMR 66 Query: 70 PLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLLQGF 129 PLGAI+LG+YIDR GRR GLI+TL +MA GT+LIA VPGY TIG+AAP+LVL GRLLQGF Sbjct: 67 PLGAIVLGAYIDRHGRRAGLILTLVLMACGTMLIALVPGYGTIGLAAPLLVLIGRLLQGF 126 Query: 130 SAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSPLQISEWG 189 SAG E GGVSVYL+E+ATPG KGFYVSWQS SQQ A+M +AL+G L+S LSP ++ EWG Sbjct: 127 SAGGEPGGVSVYLSEIATPGRKGFYVSWQSGSQQVAVMFAALLGVLLSFKLSPKEMGEWG 186 Query: 190 WRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGEIMTSIGQNWKIVVAGMMMVVM 249 WR+PF IGC+IVP +F IRRSL+ETEEF RK P+ GE++ S+G+NW++ AG ++ VM Sbjct: 187 WRVPFLIGCLIVPFLFFIRRSLRETEEFEQRKHRPTMGELLRSMGENWRLAGAGTLLAVM 246 Query: 250 TTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVGRRPVLVA 309 TTVSFYLIT YTPTFG+NVL +S DSLIVT CVG SN WLP+MG+LSDR+GRR L+ Sbjct: 247 TTVSFYLITAYTPTFGRNVLHMSDFDSLIVTLCVGASNLIWLPVMGSLSDRIGRRTPLIV 306 Query: 310 FTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPAHVRTVGF 369 F+ LTLLTAYP M+WL+++ SF LL ELWLSFLY YNGA +V LTE+MP +RT GF Sbjct: 307 FSALTLLTAYPAMTWLIAEPSFGRLLAVELWLSFLYGGYNGAMIVTLTEIMPPQLRTTGF 366 Query: 370 SLAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLIATLVLYRGKGATAA 428 SLAYSLATAIFGGFTP ++T LI +G+KA PG W+SFAA+CGL+ATL + + + AA Sbjct: 367 SLAYSLATAIFGGFTPAIATGLIHATGNKAMPGLWLSFAAICGLVATLTVVKPQPRPAA 425 >STM0689 [GEPR] COG0477 Permeases of the major facilitator superfamily Sty Salmonella typhimurium LT2 Length = 434 Score = 577 bits (1487), Expect = e-164, Method: Compositional matrix adjust. Identities = 276/420 (65%), Positives = 336/420 (80%) Query: 1 MTKTTQTAKRHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFG 60 M + T R +LRVTSGNFLE FDFFL+GFYA+YI++TFFP+++EF SL+LTF Sbjct: 1 MAQHTPATSRAGTFGAILRVTSGNFLEQFDFFLFGFYATYIARTFFPAESEFASLMLTFA 60 Query: 61 TFGAGFLMRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILV 120 FG+GFLMRP+GAI+LG+YIDR+GRR+GL+VTLAIM GTLLIA VPGY TIG+AAP LV Sbjct: 61 VFGSGFLMRPVGAIVLGAYIDRIGRRKGLMVTLAIMGCGTLLIALVPGYQTIGLAAPALV 120 Query: 121 LTGRLLQGFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSL 180 L GRLLQGFSAGVELGGVSVYL+E+ATPGNKGFY SWQSASQQ AI+ +ALIGY ++ +L Sbjct: 121 LLGRLLQGFSAGVELGGVSVYLSEIATPGNKGFYTSWQSASQQVAIVVAALIGYSLNITL 180 Query: 181 SPLQISEWGWRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGEIMTSIGQNWKIV 240 ISEWGWRIPFFIGCMI+P IF++RRSLQETE FL RK P EI +I +NW+I+ Sbjct: 181 GHDAISEWGWRIPFFIGCMIIPLIFVLRRSLQETEAFLQRKHRPDTREIFATIAKNWRII 240 Query: 241 VAGMMMVVMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDR 300 AG ++V MTT +FY ITVYTPT+G+ VL LSA DSLIVT VG+SNF WLPI GA+SDR Sbjct: 241 TAGTLLVAMTTTTFYFITVYTPTYGRTVLNLSARDSLIVTMLVGVSNFIWLPIGGAISDR 300 Query: 301 VGRRPVLVAFTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVM 360 +GRR VL+ TLL L+T +PVM WL + F + + LW SF + YNGA V ALTEVM Sbjct: 301 IGRRAVLMGITLLALITTWPVMQWLTAAPDFTRMTLVLLWFSFFFGMYNGAMVAALTEVM 360 Query: 361 PAHVRTVGFSLAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLIATLVLY 420 P +VRTVGFSLA+SLATAIFGG TP +ST L++ +GDK++PG+W+ AA+CGL AT +L+ Sbjct: 361 PVYVRTVGFSLAFSLATAIFGGLTPAISTALVKLTGDKSSPGWWLMCAALCGLAATAMLF 420 >PA5476 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae Pseudomonas aeruginosa Length = 429 Score = 556 bits (1432), Expect = e-158, Method: Compositional matrix adjust. Identities = 293/421 (69%), Positives = 348/421 (82%) Query: 8 AKRHSKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFGAGFL 67 A SK + RV SGNFLEM+DF +YGFYA+ I+KTFFP DN F SL+L+ TFGAGFL Sbjct: 2 ASNKSKGVAIFRVVSGNFLEMYDFMVYGFYATAIAKTFFPGDNPFASLMLSLATFGAGFL 61 Query: 68 MRPLGAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLLQ 127 MRPLGA+ LG+YIDR GRRQGLI+TL +MA+GTLLIAFVPGYAT+G+AAP+LVL GRLLQ Sbjct: 62 MRPLGAVFLGAYIDRHGRRQGLIITLGLMAMGTLLIAFVPGYATLGVAAPLLVLFGRLLQ 121 Query: 128 GFSAGVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSPLQISE 187 GFSAGVELGGVSVYL+E+ATPG KGF+VSWQSASQQ A++ + L+G L++Q LSP + E Sbjct: 122 GFSAGVELGGVSVYLSEIATPGRKGFFVSWQSASQQVAVVFAGLLGVLLNQWLSPQDMGE 181 Query: 188 WGWRIPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGEIMTSIGQNWKIVVAGMMMV 247 WGWR+PFFIGC+IVPA+F+IRRSL+ET EF AR PS +++ SIGQN+ +V+AG MV Sbjct: 182 WGWRVPFFIGCLIVPALFVIRRSLEETPEFEARTHRPSLSQVLRSIGQNFGVVLAGTAMV 241 Query: 248 VMTTVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVGRRPVL 307 VMTTVSFYLIT YTPTFGKN L+LS DSL+VT C+GLSNF WLP+MGA SDR+GR+P+L Sbjct: 242 VMTTVSFYLITAYTPTFGKNELQLSDLDSLLVTMCIGLSNFIWLPVMGAFSDRIGRKPLL 301 Query: 308 VAFTLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPAHVRTV 367 + + L LLTAYP +SWLV + SF LL ELWLSFLY+SYNGA VVALTEVMPA VRT Sbjct: 302 LGASALALLTAYPALSWLVREPSFAGLLGVELWLSFLYSSYNGAMVVALTEVMPADVRTT 361 Query: 368 GFSLAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLIATLVLYRGKGATA 427 GFSLAYSLATA FGGFTP V TWLI T ++AAPG W+S AA+ GL+ATLVL+R +G Sbjct: 362 GFSLAYSLATATFGGFTPAVCTWLIHTLDNRAAPGIWLSGAALLGLLATLVLFRRRGKEI 421 Query: 428 A 428 A Sbjct: 422 A 422 >PA4343 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae Pseudomonas aeruginosa Length = 439 Score = 295 bits (755), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 167/418 (39%), Positives = 238/418 (56%), Gaps = 3/418 (0%) Query: 12 SKLSTVLRVTSGNFLEMFDFFLYGFYASYISKTFFPSDNEFVSLILTFGTFGAGFLMRPL 71 S+ V GN LE +DF +YGF +S I++ FFPS +E+ SL++ TFG GF MRP+ Sbjct: 9 SRTRQVAAAVIGNALEWYDFIVYGFLSSLIARLFFPSGDEYTSLLMALATFGVGFFMRPV 68 Query: 72 GAIILGSYIDRVGRRQGLIVTLAIMALGTLLIAFVPGYATIGMAAPILVLTGRLLQGFSA 131 G ++LG Y DR GR+ + + + +M L +IAF P YA IG+ AP+L++ R+LQGF+ Sbjct: 69 GGVLLGLYADRRGRKAAMQLIILLMTLSIAMIAFAPTYAAIGVGAPLLIVIARMLQGFAT 128 Query: 132 GVELGGVSVYLAEMATPGNKGFYVSWQSASQQAAIMASALIGYLVSQSLSPLQISEWGWR 191 G E + +L E A P +G Y SWQ Q A+ A A +G LV+ L + WGWR Sbjct: 129 GGEYASATAFLVESAPPHRRGLYGSWQLFGQCLAVFAGAGMGALVTHCLDAEALESWGWR 188 Query: 192 IPFFIGCMIVPAIFIIRRSLQETEEFLARKRHPSFGEIMTSIGQNWKI-VVAGMMMVVMT 250 +PF G +I P IRR + ETE FL R P + + + + ++ V+ M + V+ Sbjct: 189 VPFLFGLLIGPVGLWIRRYMGETEAFLEAIREPGERQGLLGVLREYRRSVLVSMGLTVVG 248 Query: 251 TVSFYLITVYTPTFGKNVLKLSASDSLIVTFCVGLSNFCWLPIMGALSDRVGRRPVLVAF 310 TVSFY++ V PTF L L + +V +P+ G LSDRVGRRPVL+ Sbjct: 249 TVSFYVVLVNMPTFAHKQLGLPLDEVFMVQMAAVALMTLVIPLAGGLSDRVGRRPVLLVA 308 Query: 311 TLLTLLTAYPVMSWLVSDISFKNLLITELWLSFLYASYNGAAVVALTEVMPAHVRTVGFS 370 TL +L YP+ +W+ + S LL+ +L L + G A A+ E P VR+ G + Sbjct: 309 TLAFMLMVYPLFAWVAAAPSLGRLLLMQLLLCTAIGGFFGPAPTAVAEQFPVRVRSTGLA 368 Query: 371 LAYSLATAIFGGFTPLVSTWLIETSGDKAAPGYWMSFAAVCGLIATLVLYRGKGATAA 428 +AY+LA +FGGF P + TWL E G AP +++ AA GL+AT LY +GAT A Sbjct: 369 VAYNLAVMLFGGFAPFIVTWLTEVGGSPVAPAFYVLGAAFLGLLAT--LYLREGATPA 424