BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1277.p (253 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02427 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti 99 9e-21 SPAC1F7.10 [E] COG4126 Hydantoin racemase Spo Schizosaccharomyce... 91 3e-18 AGl353 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaci... 90 5e-18 SPCC576.02 [E] COG4126 Hydantoin racemase Spo Schizosaccharomyce... 83 6e-16 AGl3449 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefac... 78 2e-14 >SMc02427 [E] COG4126 Hydantoin racemase Sme Sinorhizobium meliloti Length = 241 Score = 99.0 bits (245), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 73/213 (34%), Positives = 110/213 (51%), Gaps = 11/213 (5%) Query: 36 LFVINPNSTAAVT-HGIEAAMAPLRMAGGPVIECLSLSSGPPGIQTQQDVDSVAPQLVSL 94 + +INPNSTA++T +E+A+ L + + + P I+ D P +++ Sbjct: 3 IHLINPNSTASMTAQALESAL--LVKHAHTHVSASNPTDTPASIEGGADEAMSVPGMLAE 60 Query: 95 ARSLRARAA-AFVIACYSDPGLYAVREAVDVPVLGIMESGVLTALTLGQRFGVIAILPGS 153 R A+ A+VIAC+ DPGL+A RE PV+GI ++ V A+T+ +RF VI LP S Sbjct: 61 IRQGEAQGVDAYVIACFDDPGLHAAREVAKGPVIGICQAAVQVAMTISRRFSVITTLPRS 120 Query: 154 IPRHLRAYGAMGVQSRLAGELAIGLNVTELAD----YNRTLARMCEVGLRLRDTHGADVI 209 +P G + AI L V L + R L + E+ + GA+ I Sbjct: 121 VPIIEDLVSDYGAERHCRKVRAIDLPVLALEEDPQRAERLLLKEIEIA---KAEDGAEAI 177 Query: 210 VMGCAGMAVYRDALQEALGIPVVEPSQAAAAMA 242 V+GCAGM+ D LQ+A G+PV++ AA MA Sbjct: 178 VLGCAGMSSLCDRLQKATGVPVIDGVTAAVKMA 210 >SPAC1F7.10 [E] COG4126 Hydantoin racemase Spo Schizosaccharomyces pombe Length = 238 Score = 90.5 bits (223), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 72/227 (31%), Positives = 112/227 (49%), Gaps = 18/227 (7%) Query: 36 LFVINPNSTAAVTHGIEAAMAPLRMAGGPVIECLSLS---SGPPGIQTQQDVDSVAPQLV 92 + VINPNST +T +++ L P ++ L+ GP I+ D A L+ Sbjct: 4 ILVINPNSTVQMTESVKSV---LDDCTPPNVQLEYLTCPPEGPKAIECVSDGVRSAAVLM 60 Query: 93 SLARSLRARAAAFVIACYSD-PGLYAVREAVDVPVLGIMESGVLTALTLGQRFGVIAILP 151 + AF+++CYSD P + +RE P GIM++ +LTAL+LG++ V+ Sbjct: 61 KYFEDHPPQVDAFLVSCYSDHPLVTTLRETYRKPCTGIMQASILTALSLGRKVSVVTTTK 120 Query: 152 GSIPRHLRAYGAMGV-QSRLAGELAIGLNVTEL-----ADYNRTLARMCEVGLRLRDTHG 205 P AMG+ S AG + GL EL A+ + LAR LR + G Sbjct: 121 RYEPLLTDGIHAMGISDSVFAGIASTGLAPLELDSKPRAEVDALLAR---TALRAVNEMG 177 Query: 206 ADVIVMGCAGMAVYRDALQEALG--IPVVEPSQAAAAMAIGRIKMNW 250 ADVI +GCAGM L++A+G IP+++ ++A + ++MN Sbjct: 178 ADVICLGCAGMTHMAHVLEKAVGPNIPIIDGTKAGVELLASLVRMNL 224 >AGl353 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 243 Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 72/211 (34%), Positives = 104/211 (49%), Gaps = 11/211 (5%) Query: 38 VINPNSTAAVTHGIEAAMAPLRMAGGPV-IECLSLSSGPPGIQTQQDVDSVAPQLVSLAR 96 +INPNSTA++T +A + LR+ + + P I+ Q D P L++ R Sbjct: 8 LINPNSTASMTA--QALDSALRVKQKDTHVSAANPVDTPVSIEGQADEAMAVPGLLAEIR 65 Query: 97 SLRARAA-AFVIACYSDPGLYAVREAVDVPVLGIMESGVLTALTLGQRFGVIAILPGSIP 155 A+VIAC+ DPGL+A RE PV+GI ++ V A+T+ +RF +I LP SIP Sbjct: 66 KGEGHGVDAYVIACFDDPGLHAAREVARGPVIGICQAAVQVAMTISRRFSIITTLPRSIP 125 Query: 156 RHLRAYGAMGVQSRLAGELAIGLNVTELADYNRT----LARMCEVGLRLRDTHGADVIVM 211 G Q AI L V L + L R E R A+ I++ Sbjct: 126 IIEDLVEDYGAQRYCRKVRAIDLPVLGLEEDPEVAEALLRREIEAAKR---EDAAEAIIL 182 Query: 212 GCAGMAVYRDALQEALGIPVVEPSQAAAAMA 242 GCAGM+ D L++A G+PV++ AA +A Sbjct: 183 GCAGMSSLCDRLRDATGVPVIDGVTAAIKLA 213 >SPCC576.02 [E] COG4126 Hydantoin racemase Spo Schizosaccharomyces pombe Length = 236 Score = 83.2 bits (204), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 69/233 (29%), Positives = 116/233 (49%), Gaps = 23/233 (9%) Query: 34 PALFVINPNSTAAVTHGIEAAMAPLRMAGGPVIECLSLSSGPPGIQTQQDVDSVAPQLVS 93 P + VINPNS+ +T +E + PL + ++ L+ PG +DS+ ++ Sbjct: 2 PTILVINPNSSTFITTSMEEKLVPLVPSD---VKLRFLTCPQPGAAV---IDSITEATLT 55 Query: 94 LARSLRARA-------AAFVIACYS-DPGLYAVREAVDVPVLGIMESGVLTALTLGQRFG 145 A +A A +ACYS P + +RE+ +P +GI+++ VL+AL++GQR G Sbjct: 56 AALVFQALTPSVLDGVDAIAVACYSPTPLVDMIRESFALPCMGIVQASVLSALSVGQRIG 115 Query: 146 VIAILPGSIPRHLRAYGAMGV-QSRLAGELAIGLNVTELADY----NRTLARMCEVGLRL 200 ++ S + GV ++R+A + G V +L+ TL + + L Sbjct: 116 ILTSTYRSECLLYELLDSFGVSRTRVAAIASTGRTVLQLSQMPSQERETL--LVQKAQEL 173 Query: 201 RDTHGADVIVMGCAGMAVYRDALQEALG--IPVVEPSQAAAAMAIGRIKMNWH 251 +T GADVI +G A +A RD +Q A+G IP+++ AA + G + N H Sbjct: 174 ANTKGADVICLGGAALAAIRDQIQVAVGPNIPIIDGVHAAVELLAGLARQNLH 226 >AGl3449 [E] COG4126 Hydantoin racemase Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 247 Score = 78.2 bits (191), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/224 (33%), Positives = 115/224 (51%), Gaps = 12/224 (5%) Query: 36 LFVINPNSTAAVTHGIEAAMAPLRMAGGPVIECLSLSS--GPPGIQTQQD-VDSVAPQLV 92 + V+NPN+T ++T I A A +R+ G E L ++S GP I+ D V +V L+ Sbjct: 3 ILVVNPNTTRSMTATI--ADAAMRVVGRDT-EILGVTSSMGPVSIEGYYDEVFAVPGLLL 59 Query: 93 SLARSLRARAAAFVIACYSDPGLYAVREAVDVPVLGIMESGVLTALTLGQRFGVIAILPG 152 LA++ A VIAC+ D GL A R D+PV+G+ E+ V + Q+F ++ + Sbjct: 60 ELAKAPALGVDAAVIACFDDTGLDAARAFCDIPVIGLCEAAVSATAFIAQKFTIVTTMER 119 Query: 153 S-IP-RHL-RAYGAMGVQSRLAGELAIGLNVTELADYNRTLARMCEVGLRLRDTHGADVI 209 S +P HL YG + A ++ + L++ + A R R E+ L L++ A+ I Sbjct: 120 SRLPLEHLVHRYGMSARCNVRAADIPV-LSLEDPASNARERLRQ-EIALALKEDR-AEAI 176 Query: 210 VMGCAGMAVYRDALQEALGIPVVEPSQAAAAMAIGRIKMNWHGA 253 V+GCAGMA L+ G+PVV+ AA A + M A Sbjct: 177 VLGCAGMADLTAELRAEFGVPVVDGVAAAVKQAESLVSMGLSTA 220