BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1265.p         (139 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2414 [L] COG2927 DNA polymerase III, chi subunit Rso Ralstoni...   136   1e-32
PA3832 [L] COG2927 DNA polymerase III, chi subunit Pae Pseudomon...    91   5e-19
XF0136 [L] COG2927 DNA polymerase III, chi subunit Xfa Xylella f...    76   2e-14
NMB1568 [L] COG2927 DNA polymerase III, chi subunit Nme Neisseri...    66   2e-11
NMA1757 [L] COG2927 DNA polymerase III, chi subunit NmA Neisseri...    65   3e-11

>RSc2414 [L] COG2927 DNA polymerase III, chi subunit Rso Ralstonia
           solanacearum
          Length = 142

 Score =  136 bits (343), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 79/139 (56%), Positives = 100/139 (71%), Gaps = 5/139 (3%)

Query: 1   MTRIDFHSNVPQKIAYVCRLVRKARSAGASIVLRARDRAELQQLDQALWSFSEQDFLPHV 60
           MTR+DFHSNVP K+AY CRLVRKA  AG  +++   +RA L+  D  LW+FS+ DFLPH 
Sbjct: 1   MTRVDFHSNVPGKLAYACRLVRKAYGAGQKVIVVG-NRAALEAFDAQLWTFSQLDFLPHC 59

Query: 61  MAGDPLAAQTPIILTADDNTEL---PHHQILINLGSDTPAHFARFERLLEIISADDADKA 117
                LAAQTPI+L AD +  L   PHH IL+NL   TP  FARF RL+EI+  D+A++A
Sbjct: 60  GLRHRLAAQTPILL-ADASEPLDDAPHHDILVNLSDATPPLFARFARLIEIVGDDEAERA 118

Query: 118 AGRDRYRFYKERGYPLSHH 136
           A RDR+RFY++RGYP+ HH
Sbjct: 119 AARDRFRFYRDRGYPIQHH 137


>PA3832 [L] COG2927 DNA polymerase III, chi subunit Pae Pseudomonas
           aeruginosa
          Length = 142

 Score = 91.3 bits (225), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 49/140 (35%), Positives = 76/140 (54%), Gaps = 7/140 (5%)

Query: 1   MTRIDFH----SNVPQKIAYVCRLVRKARSAGASIVLRARDRAELQQLDQALWSFSEQDF 56
           MTR+DF+    ++   ++   CRL  KA   G  + L   D A+  +LD  LWSF  + F
Sbjct: 1   MTRVDFYVIPSADPSARLQVACRLAEKAWRQGMQVYLHCADEAQRSELDGRLWSFRGEAF 60

Query: 57  LPHVMAGDPLAAQTPIILTADDNTELPHHQILINLGSDTPAHFARFERLLEIISADDADK 116
           +PH +A +   A+ P+ L   +     H  +LINL  + P     F R+ E++  + A +
Sbjct: 61  IPHSLAEE--DAEAPVALGLGEPPG-NHRDLLINLTLEAPGFVPNFSRVAELVVEEPAIR 117

Query: 117 AAGRDRYRFYKERGYPLSHH 136
            A RD++RFY+E+GYPL  H
Sbjct: 118 QAARDKFRFYREQGYPLQDH 137


>XF0136 [L] COG2927 DNA polymerase III, chi subunit Xfa Xylella fastidiosa
           9a5c
          Length = 141

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/141 (33%), Positives = 74/141 (52%), Gaps = 7/141 (4%)

Query: 1   MTRIDFH-----SNVPQKIAYVCRLVRKARSAGASIVLRARDRAELQQLDQALWSFSEQD 55
           M R DF+       + Q +  VC LVRKA       ++ ARD+A+ + LD  LW+F    
Sbjct: 1   MARADFYLIAKPRFLQQPLELVCALVRKAYDTNQPTLILARDQAQAEALDDLLWAFDPDA 60

Query: 56  FLPHVMAGDPLAAQTPIILTADDNTELPHHQILINLGSDTPAHFARFERLLEIISADDAD 115
           ++PH +AG         +L A  +++ P   ++INL  D P      ER+LE++ AD A 
Sbjct: 61  YIPHQIAGSDEDDDITPVLIATPDSDTPSRPLVINL-RDAPWD-GPCERVLEVVPADPAA 118

Query: 116 KAAGRDRYRFYKERGYPLSHH 136
           +   R+R++ YK RG  ++ H
Sbjct: 119 REPLRERWKHYKARGLHMNKH 139


>NMB1568 [L] COG2927 DNA polymerase III, chi subunit Nme Neisseria
           meningitidis MC58
          Length = 146

 Score = 65.9 bits (159), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 1   MTRIDFHSNVPQKIAYVCRLVRKARSAGASIVLRARDRAELQQLDQALWSFSEQDFLPHV 60
           M +  F+++V Q   + CRL+ +A   G  I++ +    +LQ+LD+ LW +  + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  M--AGDPLAAQTPIILTADDNT-ELPHHQILINLGSDTPAHFARF--ERLLEIISADDAD 115
           +    + + ++  ++L    N   +P    ++NL SD   + A     R+LEI+     +
Sbjct: 61  IWETEEAMPSEPSVLLACGGNLPRIPEGMTVLNL-SDGFWNTAPVLPARVLEIVGNSLEE 119

Query: 116 KAAGRDRYRFYKERGYPLSHH 136
            A  R+R+  Y+  G+ + HH
Sbjct: 120 LADARERFTAYRRSGFAIEHH 140


>NMA1757 [L] COG2927 DNA polymerase III, chi subunit NmA Neisseria
           meningitidis Z2491
          Length = 146

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 38/141 (26%), Positives = 73/141 (51%), Gaps = 6/141 (4%)

Query: 1   MTRIDFHSNVPQKIAYVCRLVRKARSAGASIVLRARDRAELQQLDQALWSFSEQDFLPHV 60
           M +  F+++V Q   + CRL+ +A   G  I++ +    +LQ+LD+ LW +  + F+PH 
Sbjct: 1   MPKATFYTHVAQVPIFTCRLIARAIRDGGRILVWSDSFGQLQELDKMLWQYEAESFIPHE 60

Query: 61  M--AGDPLAAQTPIILTADDNT-ELPHHQILINLGSDTPAHFARF--ERLLEIISADDAD 115
           +    + + ++  ++L    N   +P    ++NL SD   + A     R+LEI+     +
Sbjct: 61  IWETEEAMPSEPSVLLACGGNLPRIPEGMAVLNL-SDGFWNTAPVLPARVLEIVGNSLEE 119

Query: 116 KAAGRDRYRFYKERGYPLSHH 136
            A  R+R+  Y+  G+ + HH
Sbjct: 120 LADARERFTAYRRSGFAIEHH 140