BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1218.p (233 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas ae... 80 3e-15 BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subt... 80 5e-15 SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium... 77 2e-14 SSO1255 [K] COG1802 Transcriptional regulators Sso Sulfolobus so... 75 1e-13 mll6782 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium... 75 2e-13 >PA0797 [K] COG1802 Transcriptional regulators Pae Pseudomonas aeruginosa Length = 240 Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 103/208 (49%), Gaps = 5/208 (2%) Query: 9 LAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L+E V+ +I+ I S + PG +E E+A+ G+SR PLR+A+ RL+ L G Sbjct: 18 LSEHVFRKIQSAIVSGEIAPGSKISEPELARTYGISRGPLREAIHRLEGLRLLVRVPHVG 77 Query: 69 WKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAREADAVRV 128 +V + L LY++R LE A +L +++ + A +++L + A R Sbjct: 78 ARVVSLSHAELIELYEIRESLEGMAC-RLAAERMSQAEIDELRRVLDTHERDEAFQAGRG 136 Query: 129 ---AELDEAFHTNLVAAAGNQEMTRV-HTEVTEKIRIVRRLDFLKKKRIEATYEEHGKIL 184 E D FH ++ +GN +TR+ E+ + +R+ R R + EH +IL Sbjct: 137 YYQQEGDYDFHYRIIQGSGNATLTRMLCGELYQLVRMYRIQYSTTPNRPRQAFAEHHRIL 196 Query: 185 QLIAKRKSTEAQILLRAHITQSKLEVRK 212 IA R A++L+R HI+ S+ + + Sbjct: 197 DAIADRDGELAELLMRRHISASRRNIER 224 >BS_ydhC [K] COG1802 Transcriptional regulators Bsu Bacillus subtilis Length = 224 Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 100/204 (49%), Gaps = 9/204 (4%) Query: 8 PLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRR 67 P Q Y+++K IF+ PG+ ET++A+ GVSR+P+R+A+ L+++G L+ R Sbjct: 11 PYYLQFYNQLKKMIFNGTFKPGERINETQLAKSFGVSRSPIREAMRLLEKDGLLKADDRN 70 Query: 68 GWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPEAREA---- 123 G+ + + +D +Y +RI LE A++ + + A E+L + E +A Sbjct: 71 GFSITSLTAKDVDEIYKIRIPLEQLAVELVIDE----ADEEELTILEKQLEETEKAIHNG 126 Query: 124 -DAVRVAELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGK 182 + + L++ FH LV + N+ + + V + I R L++ R E EH + Sbjct: 127 TEDTEIIRLNQKFHELLVDFSHNRHLKNLLEHVNDLIHFCRILNYTGDHRAETILREHRR 186 Query: 183 ILQLIAKRKSTEAQILLRAHITQS 206 I + + K+ A+ + AH Sbjct: 187 IFEEVKKKNKEAAKQHVLAHFNHD 210 >SMa0160 [K] COG1802 Transcriptional regulators Sme Sinorhizobium meliloti Length = 224 Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 105/204 (51%), Gaps = 14/204 (6%) Query: 9 LAEQVYHRIKDDI----FSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVG 64 ++E ++++++DDI + PG+ ET++A R GVSRTP+R+AL +L G +E+ Sbjct: 1 MSENIFYKLRDDIENGIVTGEFEPGERLDETQLAMRFGVSRTPIREALMQLSAIGLVEIR 60 Query: 65 FRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQATAALEQLNAIWLVEPE-AREA 123 RRG V R+ ++++ MA L+ + A E+ +A L E REA Sbjct: 61 PRRGAVVVDPAPQRVYEMFEV-----MAELEGMAGALAARRHTEEDSAALLAAHEKCREA 115 Query: 124 ----DAVRVAELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEE 179 + R +E FH + A+ + + T + ++R RRL + R++ ++ E Sbjct: 116 VLSEETDRYYYENEIFHRAIYTASHSGFLEEQCTTLHRRLRPYRRLQLRVRNRMKVSFRE 175 Query: 180 HGKILQLIAKRKSTEAQILLRAHI 203 HG+I++ I + A+ LR+H+ Sbjct: 176 HGEIVEAILSGNTDGAREGLRSHV 199 >SSO1255 [K] COG1802 Transcriptional regulators Sso Sulfolobus solfataricus Length = 212 Score = 75.5 bits (184), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 58/198 (29%), Positives = 101/198 (51%), Gaps = 10/198 (5%) Query: 9 LAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYLEVGFRRG 68 L++ Y +I + I + + PG+ E E+A +SRTP+R+AL RL++EG + V + Sbjct: 3 LSQIAYEKILEYIITGKYKPGNTLKEEELASLLKISRTPIREALARLEKEGVI-VKNGKS 61 Query: 69 WKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQQQAT-AALEQLNAIWLVEPEAR---EAD 124 + V P+ + LY++RI LE L ++ A A+ +++N I V E R AD Sbjct: 62 FTVIPLTESDILQLYEVRINLE-----SLSAKLAAIRASQDEINKIINVLNEIRGSANAD 116 Query: 125 AVRVAELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYEEHGKIL 184 + +A L+ H + A+ N+ + + + K++IVR F +R + + EH I+ Sbjct: 117 PLTLANLNGNLHRAIAEASHNKYIVDILDSIRLKLKIVRITLFTSFQRRDEEFREHESIV 176 Query: 185 QLIAKRKSTEAQILLRAH 202 I R A ++R H Sbjct: 177 IAIKNRSPDLAYDMMRMH 194 >mll6782 [K] COG1802 Transcriptional regulators Mlo Mesorhizobium loti Length = 224 Score = 74.7 bits (182), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 61/208 (29%), Positives = 101/208 (48%), Gaps = 6/208 (2%) Query: 2 TVTVANPLAEQVYHRIKDDIFSFRLLPGDNFTETEMAQRQGVSRTPLRDALFRLQREGYL 61 T+ A PL +Q+YH+I++ I +L PG+ E +A+ GVSRTP+R+A+ R+ EG + Sbjct: 7 TLNRALPLRDQIYHKIRNLIVVGQLKPGEVINEVAIAEALGVSRTPVREAVKRISDEGLV 66 Query: 62 EVGFRRGWKVCPIDFDRLDNLYDLRIVLEMAALDKLCSQ-QQATAAL--EQLNAIWLVEP 118 ++ + G V PI L+ Y +R LEM + + ++ A+A L + + A L Sbjct: 67 KILAQTGTYVAPISRADLEEAYVIRRALEMESARRAAAKLTPASAELLEDNMAAHKLAIS 126 Query: 119 EAREADAVRVAELDEAFHTNLVAAAGNQEMTRVHTEVTEKIRIVRRLDFLKKKRIEATYE 178 R A A+ +LD+ FH + G + R ++ R L K E T E Sbjct: 127 RGRYATAI---QLDDVFHRTIAEICGLPMIWRAVDISKAQMDRGRYLAIPKPGYGEQTIE 183 Query: 179 EHGKILQLIAKRKSTEAQILLRAHITQS 206 +H IL + + + A + H+ S Sbjct: 184 QHEAILDALKRHDAEGAAQAMENHLETS 211