BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1212.p         (363 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA5047 [R] COG4784 Putative Zn-dependent protease Pae Pseudomona...    54   4e-07
YPO3069 [R] COG4783 Putative Zn-dependent protease, contains TPR...    52   2e-06
VCA0581 [O] COG0501 Zn-dependent protease with chaperone functio...    50   1e-05
XF2594 [R] COG4783 Putative Zn-dependent protease, contains TPR ...    48   3e-05
STM2494 [R] COG4783 Putative Zn-dependent protease, contains TPR...    47   5e-05

>PA5047 [R] COG4784 Putative Zn-dependent protease Pae Pseudomonas
           aeruginosa
          Length = 479

 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/177 (25%), Positives = 80/177 (45%), Gaps = 22/177 (12%)

Query: 208 NVNTYA-DGRRVLITRGMLKFTQSDDELAYLIAKDMAHNILGHAIRQRMVSTIAEVIDNL 266
           ++N +A  G  + I RG++ +  S+ ELA ++  ++ H    H++RQ+  ++   ++   
Sbjct: 92  DINAFALPGGYIYIHRGLIAYLGSEAELAAVLGHEVGHVTARHSVRQQSQASAWNILGQA 151

Query: 267 LL------PHPDPTTTAGTAGIRVYPQDLDAAADTLSLYLLARAGYN----------IDN 310
           +          D     GTA +R Y +D++  AD L    LARAGY+          + N
Sbjct: 152 VAIGTGVGAAGDLANVLGTAFVRGYGRDMELEADGLGAQYLARAGYDPTAMIQVVRVLKN 211

Query: 311 VPAFWKRLADQYPASV-PNGYTAL---HPSTAYRL-AMIEKVTQIVKAKQEAGKPLV 362
              F +  A +   +V   GY  L   HP    RL  ++    Q+   +QE G+ + 
Sbjct: 212 QEDFAREEAARNGQAVQAGGYHGLFDTHPDNDRRLQEVVGPARQLANGQQEVGREVF 268


>YPO3069 [R] COG4783 Putative Zn-dependent protease, contains TPR repeats
           Ype Yersinia pestis
          Length = 486

 Score = 52.4 bits (124), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/139 (27%), Positives = 67/139 (48%), Gaps = 16/139 (11%)

Query: 199 FSIELGNADNVNTYAD-GRRVLITRGMLKFTQSDDELAYLIAKDMAHNILGHAIR----- 252
           F   L N D +N +A  G  V++   + ++T ++ ELA ++A +++H    H  R     
Sbjct: 92  FHFYLVNNDQINAFAFFGGNVVLHSALFRYTDNESELASVLAHEISHVTQRHLARAMEEQ 151

Query: 253 QRMVS-TIAEVIDNLLLPHPDP---------TTTAGTAGIRVYPQDLDAAADTLSLYLLA 302
           QR+   T   V+ ++LL    P         T      GI  + Q  +  AD + + +L 
Sbjct: 152 QRLAPLTWVGVLGSILLTMASPQAGMAGLSGTLAGAQQGIISFTQGNEQEADRIGIQVLQ 211

Query: 303 RAGYNIDNVPAFWKRLADQ 321
           R+G++   +P F ++LADQ
Sbjct: 212 RSGFDPQAMPNFLQKLADQ 230


>VCA0581 [O] COG0501 Zn-dependent protease with chaperone function Vch
           Vibrio cholerae
          Length = 263

 Score = 49.7 bits (117), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 15/159 (9%)

Query: 199 FSIELGNADNVNTYA-DGRRVLITRGMLKFTQSDDELAYLIAKDMAHNILGHAIRQRMVS 257
           + + +  +D VN +A  G ++ +  G+LK   + D+LA +I  ++AH +  H+  +   S
Sbjct: 84  WEVVVFESDQVNAFALPGGKIGVYTGLLKVAVNQDQLATVIGHEIAHVLSNHSNERLSQS 143

Query: 258 TIAEVIDNL---------LLPHPDPTTTAGTAGIRV-----YPQDLDAAADTLSLYLLAR 303
            +A     L            + + T +A   G++      Y +  ++ AD L L L+AR
Sbjct: 144 QLANAGLQLTDIAIGASEYAQYRNLTMSALGVGVQYGVILPYGRSQESEADILGLALMAR 203

Query: 304 AGYNIDNVPAFWKRLADQYPASVPNGYTALHPSTAYRLA 342
           AG++       WK +A       P    + HPS + R++
Sbjct: 204 AGFDPYQSIELWKNMAKASGGKQPPELLSTHPSHSTRIS 242


>XF2594 [R] COG4783 Putative Zn-dependent protease, contains TPR repeats
           Xfa Xylella fastidiosa 9a5c
          Length = 554

 Score = 48.1 bits (113), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 36/187 (19%)

Query: 199 FSIELGNADNVNTYAD-GRRVLITRGMLKFTQSDDELAYLIAKDMAHNILGHAIR----- 252
           F+  L     +N +A  G  V +  G+L   +S+DE+A +++ ++AH    H +R     
Sbjct: 101 FTFVLLKERQINAFATLGAYVAVNSGLLLTAESEDEVAAVLSHEIAHITQKHVLRSVERA 160

Query: 253 QR-----MVSTIAEVIDNLLL---PHPDPTTTAGTAGIRV-------YPQDLDAAADTLS 297
           QR     ++  +A VI    +      D T    T+ + +       Y +  +A AD L 
Sbjct: 161 QRDQIPILLGMLAAVIAAQHVGGNSSGDATMAGITSAMGLMQQRQINYTRSNEAEADRLG 220

Query: 298 LYLLARAGYNIDNVPAFWKRLA---------DQYPASVPNGYTALHPSTAYRLAMIE-KV 347
           ++ LAR+GY+++ +  F++R++         DQ P      Y   HP T  R++  + + 
Sbjct: 221 IHTLARSGYDLEAMAGFFERMSLVTRGNSGGDQAP-----DYLQTHPVTVTRISEAKARA 275

Query: 348 TQIVKAK 354
            Q+ K K
Sbjct: 276 EQLKKQK 282


>STM2494 [R] COG4783 Putative Zn-dependent protease, contains TPR repeats
           Sty Salmonella typhimurium LT2
          Length = 487

 Score = 47.4 bits (111), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 57/215 (26%), Positives = 97/215 (45%), Gaps = 28/215 (13%)

Query: 149 GKPMPQGTDAERQ----AAVLLSPLVVKKAPIALGVQRNGQNSVVNVPLTYACAFSIELG 204
           G+ M  G    RQ    A ++  PL+V+    ALG++       V  P      F   L 
Sbjct: 47  GQEMQMGDFYVRQLRGSAPLINDPLLVQYIN-ALGMRLVSHADSVKTP------FHFFLI 99

Query: 205 NADNVNTYAD-GRRVLITRGMLKFTQSDDELAYLIAKDMAHNILGHAIR----QRMVSTI 259
           N D +N +A  G  V++   + ++  ++ +LA ++A +++H    H  R    Q+  + +
Sbjct: 100 NNDEINAFAFFGGNVVLHSALFRYADNESQLASVMAHEISHVTQRHLARAMEDQKRSAPL 159

Query: 260 AEV--IDNLLLPHPDPT--------TTAGT-AGIRVYPQDLDAAADTLSLYLLARAGYNI 308
             V  + ++LL    P         T AGT  G+  + Q  +  AD + + +L RAG++ 
Sbjct: 160 TWVGALGSILLAMASPQAGMAALTGTLAGTRQGMISFTQQNEQEADRIGIQVLQRAGFDP 219

Query: 309 DNVPAFWKRLADQYPASV-PNGYTALHPSTAYRLA 342
             +P+F ++L DQ   S  P      HP    RLA
Sbjct: 220 QAMPSFLEKLLDQARYSTRPPEILLTHPLPESRLA 254