BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1209.p         (68 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum    124   7e-29
RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum    123   8e-29
NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitid...   120   6e-28
NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitid...   120   7e-28
RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum    105   3e-23

>RSc2466 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score =  124 bits (310), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 64/67 (95%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MA GTVKWFND+KGFGFI+PD+GGE+LFAHFSAIQMNGFKTLKEGQ+V FDVTQGPKGKQ
Sbjct: 1  MANGTVKWFNDAKGFGFISPDEGGEELFAHFSAIQMNGFKTLKEGQRVAFDVTQGPKGKQ 60

Query: 61 ASNIQNA 67
          A+NIQ A
Sbjct: 61 ATNIQAA 67


>RSp1053 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score =  123 bits (309), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 58/67 (86%), Positives = 63/67 (94%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATGTVKWFND+KGFGFITPD+GGEDLFAHFSAI M GFKTLKEGQ+V F++TQGPKGKQ
Sbjct: 1  MATGTVKWFNDAKGFGFITPDEGGEDLFAHFSAINMQGFKTLKEGQRVSFEITQGPKGKQ 60

Query: 61 ASNIQNA 67
          ASNIQ A
Sbjct: 61 ASNIQAA 67


>NMA1047 [K] COG1278 Cold shock proteins NmA Neisseria meningitidis Z2491
          Length = 67

 Score =  120 bits (302), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 62/67 (92%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATG VKWFND+KGFGFITPD+GGEDLFAHFSAI M+GFKTLKEGQ+V FDVT GPKGKQ
Sbjct: 1  MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMDGFKTLKEGQRVSFDVTTGPKGKQ 60

Query: 61 ASNIQNA 67
          A+NIQ A
Sbjct: 61 AANIQAA 67


>NMB0838 [K] COG1278 Cold shock proteins Nme Neisseria meningitidis MC58
          Length = 67

 Score =  120 bits (301), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 57/67 (85%), Positives = 61/67 (91%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATG VKWFND+KGFGFITPD+GGEDLFAHFSAI M GFKTLKEGQ+V FDVT GPKGKQ
Sbjct: 1  MATGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTGPKGKQ 60

Query: 61 ASNIQNA 67
          A+NIQ A
Sbjct: 61 AANIQAA 67


>RSp0002 [K] COG1278 Cold shock proteins Rso Ralstonia solanacearum
          Length = 67

 Score =  105 bits (261), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 51/65 (78%), Positives = 57/65 (87%)

Query: 1  MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFDVTQGPKGKQ 60
          MATGTVKWFN++KGFGFITPD GG DLFAHFS IQ +GFKTLK+GQKV F+V QGPKG Q
Sbjct: 1  MATGTVKWFNETKGFGFITPDGGGADLFAHFSEIQGSGFKTLKDGQKVSFEVKQGPKGLQ 60

Query: 61 ASNIQ 65
          AS I+
Sbjct: 61 ASGIK 65