BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1198.p (230 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1534 [TK] COG0745 Response regulators consisting of a CheY-li... 228 8e-60 PA5360 [TK] COG0745 Response regulators consisting of a CheY-lik... 221 1e-57 VC0719 [TK] COG0745 Response regulators consisting of a CheY-lik... 220 3e-57 STM0397 [TK] COG0745 Response regulators consisting of a CheY-li... 218 1e-56 phoB [TK] COG0745 Response regulators consisting of a CheY-like ... 217 1e-56 >RSc1534 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 237 Score = 228 bits (581), Expect = 8e-60, Method: Compositional matrix adjust. Identities = 113/228 (49%), Positives = 160/228 (70%), Gaps = 8/228 (3%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL+VEDEP+IAEL+ ++ AG A + QA L+++ LP +VLLDWMLP SG++ Sbjct: 5 ILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGVMF 64 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 ELR ++RT +P+IMLTA+ E+DK+ GL+ GADDYVTKPFSPKEL+AR++A+LRR+A Sbjct: 65 AKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRRRA 124 Query: 128 PEIGSQALRYGEISIDVERRQVSVAG----KSVLLD--QAEFKLLRYLVAHPDRIFSRAQ 181 P++ + + +D +V+ + LD EF+LL +L+ HP+R+ SR+Q Sbjct: 125 PQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSRSQ 184 Query: 182 LLDKVWGDHTFIEERTVDVHIMRLRKSL--GDLAHYVQTVRGMGYKLS 227 LLD+VWGDH F+EERTVDVHI RLR +L G + ++TVRG GY+L+ Sbjct: 185 LLDQVWGDHVFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLA 232 >PA5360 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 221 bits (562), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 156/223 (69%), Gaps = 1/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL+V+DE I E++ +E AG+ A + QA +I + P ++LLDWMLP +SG+ L Sbjct: 6 ILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIEL 65 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 L+RD+ T +P+IMLTAKG E++K++GL GADDY+TKPFSP+ELVAR++A+LRR Sbjct: 66 ARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRTG 125 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P + G + +D +V++ GK + E++LL++ + H +R ++R QLLD+VW Sbjct: 126 PGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQVW 185 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDL-AHYVQTVRGMGYKLSTE 229 G + ++EERTVDVHI RLRK+LG++ + VQTVRG GY+ ST+ Sbjct: 186 GGNVYVEERTVDVHIRRLRKALGEVYENLVQTVRGTGYRFSTK 228 >VC0719 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Vch Vibrio cholerae Length = 229 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 151/224 (67%), Gaps = 2/224 (0%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL+VEDE I E+L F +E G+ A A D A +AE P +VLLDWMLP SG+ L Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + ++R++ T +PV+MLTA+G EEDKV+GL GADDY+TKPFSPKELVAR++A++RR Sbjct: 65 IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P + + +D +V+ + + + EFK+L + + H +R++SR QLL+ VW Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLSTE 229 G + ++E+RTVDVHI RLRK+L D H +QTVRG GY+ ST+ Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRFSTK 228 >STM0397 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 229 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 107/223 (47%), Positives = 147/223 (65%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F +E GF A D A + E P ++LLDWMLP SGL Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + L+R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P + + +S+D +V + + EFKLL + + HP+R++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLST 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ ST Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRFST 227 >phoB [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Eco Escherichia coli K12 Length = 229 Score = 217 bits (553), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 106/223 (47%), Positives = 148/223 (66%), Gaps = 2/223 (0%) Query: 8 ILMVEDEPSIAELLRFTMEGAGFAATIASDVAQARKLIAESLPHMVLLDWMLPDSSGLVL 67 IL+VEDE I E++ F +E GF A D A + E P ++LLDWMLP SG+ Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQLNEPWPDLILLDWMLPGGSGIQF 64 Query: 68 LSELRRDQRTAALPVIMLTAKGMEEDKVKGLNEGADDYVTKPFSPKELVARVQALLRRKA 127 + L+R+ T +PV+MLTA+G EED+V+GL GADDY+TKPFSPKELVAR++A++RR + Sbjct: 65 IKHLKRESMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 128 PEIGSQALRYGEISIDVERRQVSVAGKSVLLDQAEFKLLRYLVAHPDRIFSRAQLLDKVW 187 P + + +S+D +V + + + EFKLL + + HP+R++SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPTSHRVMAGEEPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 188 GDHTFIEERTVDVHIMRLRKSLGDLAH--YVQTVRGMGYKLST 228 G + ++E+RTVDVHI RLRK+L H VQTVRG GY+ ST Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEPGGHDRMVQTVRGTGYRFST 227