BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1182.p (318 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 141 2e-33 AGc4269 [K] COG0583 Transcriptional regulator Atu Agrobacterium ... 135 2e-31 Z3395 [K] COG0583 Transcriptional regulator EcZ Escherichia coli... 125 9e-29 ECs3032 [K] COG0583 Transcriptional regulator Ecs Escherichia co... 125 9e-29 STM2180 [K] COG0583 Transcriptional regulator Sty Salmonella typ... 110 6e-24 >PA2206 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 315 Score = 141 bits (355), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 86/284 (30%), Positives = 147/284 (51%), Gaps = 1/284 (0%) Query: 33 SLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQFGHCVIRYARLMATDLG 92 SL +A+ + MTQ AA+K L E E +L +LFER G+ FG +I Y+R++ +L Sbjct: 30 SLRRAADEIGMTQPAATKMLHEAEDLLGVELFERLPRGMRATPFGETLIYYSRMIFAELS 89 Query: 93 SLCEEMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQRRHPELSIDIVEDTSVQLLGLL 152 + EE+ L SG GR+ +GA+ L+ + L++ HP LS+ I DTS L+ L Sbjct: 90 GMREELVALESGNLGRVTVGAIPALASSLLTRTIATLKQSHPRLSMSIQVDTSDVLVQAL 149 Query: 153 DEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRPRAKHMGLAALAGYRWVTY 212 + LD+++ R + L EE L VVV ++P +A+ + L WV Sbjct: 150 QQDQLDVVLGRIPSGARTDDLVFDSLGEEELCVVVGAQNPLSQARKLDWGELQELTWVLQ 209 Query: 213 PSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQQSSDLVSILPTAVAELFVKRG 272 P+ ++ + A + +P + + T S ++LLQQ +D++ I P +V E + + Sbjct: 210 QHPSPMRGIVNQAFHNARIDLPSSIVETTSIMTLLSLLQQ-TDMIGITPRSVIEDYPGKH 268 Query: 273 MLRILPVKLRSMSQTIGIVTRKGGQLSRAGEMFVRMLNEGASRN 316 +L ILP++L G++TR+ S A + F+ ++ +R+ Sbjct: 269 LLAILPIQLEPRLPPYGLITRRNRVHSSAMQTFMASVHAEQARH 312 >AGc4269 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 341 Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 90/283 (31%), Positives = 146/283 (51%), Gaps = 5/283 (1%) Query: 17 LRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQF 76 L+M L++L+ +++H + A++A+ MTQ AAS+ L+E+E+++ + L +R G++ +F Sbjct: 36 LKMSHLRMLVMIEEHGQVSAAAAAMNMTQPAASRMLSEMEAIVKSPLCQRASRGVVLTKF 95 Query: 77 GHCVIRYARLMATDLGSLCEEMAQLRSGRGGRLAIGAVMGALPELVVPAVEALQRRHPEL 136 G + R AR + +L E+ Q++SG GG + IGAV LVVPA+ +P + Sbjct: 96 GEALARRARTILLELREASRELNQMKSGSGGSVYIGAVTAPAISLVVPAIRRAMDTYPGI 155 Query: 137 SIDI-VEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRPR 195 I++ VE ++V LL H D ++ R PG + + E +VV HP R Sbjct: 156 EINVQVESSNVLARELLAARH-DFIIGRIPDDFDPGLFSIHEIGIERACLVVREGHPLMR 214 Query: 196 AKHMGLAALAGYRWVTYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQQSSD 255 + + L L+GY WV P L +E GV MP N I+T S +T+AL+ ++ Sbjct: 215 GEPVTLQDLSGYDWVFQPPGALLRRTMEDVFLTHGVAMPRNVINTPSVVLTLALVCNTNA 274 Query: 256 LVSI---LPTAVAELFVKRGMLRILPVKLRSMSQTIGIVTRKG 295 + I + VA G RILP + + I+T KG Sbjct: 275 IAPIAQDMAEFVAGQQADIGRTRILPTDFELVVKPYSIITTKG 317 >Z3395 [K] COG0583 Transcriptional regulator EcZ Escherichia coli O157:H7 EDL933 Length = 318 Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 3/298 (1%) Query: 16 RLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQ 75 +L++ L++L+AL + +L + + +TQ A SK L++LE + LFER GL P + Sbjct: 23 KLKLHHLEMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSKGLRPTE 82 Query: 76 FGHCVIRYARLMATDLGSLCEEMAQLRS-GRGGRLAIGAVMGALPELVVPAVEALQRRHP 134 G ++++A+ + D+ E+A+ + G G L IG A + V A+ L + P Sbjct: 83 GGKLLLQHAQRLINDMERSQHELARFKQGGLVGSLKIGCSPVA-TDCVSQAILHLLTKMP 141 Query: 135 ELSIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRP 194 L ++I E LL L G +D++V R +YQ L EP+ V EHP Sbjct: 142 TLHLNIEEKVMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYQVLYTEPVCFVARPEHPLA 201 Query: 195 RAKHMGLAALAGYRWVTYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQQSS 254 + + LA +RW+ +P+ P+ ++ + GV +P N I +AS V+ LL QSS Sbjct: 202 KYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASMNVSTNLL-QSS 260 Query: 255 DLVSILPTAVAELFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSRAGEMFVRMLNEG 312 D++SIL +A+ + +G L IL + ++G+ R S A F+ L + Sbjct: 261 DMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRNNETPSYALSQFLHFLQQN 318 >ECs3032 [K] COG0583 Transcriptional regulator Ecs Escherichia coli O157:H7 Length = 318 Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 89/298 (29%), Positives = 149/298 (50%), Gaps = 3/298 (1%) Query: 16 RLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQ 75 +L++ L++L+AL + +L + + +TQ A SK L++LE + LFER GL P + Sbjct: 23 KLKLHHLEMLVALGEQGNLTHVARMMNITQPALSKWLSQLEDEIGITLFERHSKGLRPTE 82 Query: 76 FGHCVIRYARLMATDLGSLCEEMAQLRS-GRGGRLAIGAVMGALPELVVPAVEALQRRHP 134 G ++++A+ + D+ E+A+ + G G L IG A + V A+ L + P Sbjct: 83 GGKLLLQHAQRLINDMERSQHELARFKQGGLVGSLKIGCSPVA-TDCVSQAILHLLTKMP 141 Query: 135 ELSIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRP 194 L ++I E LL L G +D++V R +YQ L EP+ V EHP Sbjct: 142 TLHLNIEEKVMTPLLQDLLAGSVDVVVGRIGGRALQLPLNYQVLYTEPVCFVARPEHPLA 201 Query: 195 RAKHMGLAALAGYRWVTYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQQSS 254 + + LA +RW+ +P+ P+ ++ + GV +P N I +AS V+ LL QSS Sbjct: 202 KYATLSWNDLANWRWIVWPTGTPIRISIDNALVDHGVMLPENTIESASMNVSTNLL-QSS 260 Query: 255 DLVSILPTAVAELFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSRAGEMFVRMLNEG 312 D++SIL +A+ + +G L IL + ++G+ R S A F+ L + Sbjct: 261 DMISILSLRLAQRYASQGQLVILNLPKIEQKGSVGVFWRNNETPSYALSQFLHFLQQN 318 >STM2180 [K] COG0583 Transcriptional regulator Sty Salmonella typhimurium LT2 Length = 302 Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 90/295 (30%), Positives = 148/295 (50%), Gaps = 3/295 (1%) Query: 16 RLRMKQLQLLIALDDHQSLHKASSALAMTQSAASKSLAELESMLDAQLFERTKSGLIPNQ 75 +L++ LQ L+AL + +L + + ++Q A SK L++LE + LFER GL P++ Sbjct: 7 KLKLHHLQTLVALGEQGNLTHVARMMNISQPALSKWLSQLEDEIGITLFERHSKGLRPSE 66 Query: 76 FGHCVIRYARLMATDLGSLCEEMAQLRS-GRGGRLAIGAVMGALPELVVPAVEALQRRHP 134 G ++++A+ + DL E+A+ + G G L IG A + V A+ +L P Sbjct: 67 GGKLLLQHAQRLINDLERSQYEIARFKQGGLVGSLKIGCSPVA-TDCVSQAILSLLNEMP 125 Query: 135 ELSIDIVEDTSVQLLGLLDEGHLDLLVARASVSDHPGKYHYQPLSEEPLSVVVSGEHPRP 194 L ++I E LL L G +D++V R +YQ L EP+ V HP Sbjct: 126 TLHLNIEEKVMTPLLHDLLAGQVDVVVGRVGGRALQLPLNYQVLYTEPVCFVARPHHPLA 185 Query: 195 RAKHMGLAALAGYRWVTYPSHMPLHAVLEREMDLAGVPMPGNAISTASTFVTVALLQQSS 254 + + LA +RW+ +P+ P+ ++ + GV +P N I +AS V+ LL QSS Sbjct: 186 ARAQIAWSDLAHWRWIVWPTGTPIRISIDNALVDNGVMLPENTIESASMNVSTNLL-QSS 244 Query: 255 DLVSILPTAVAELFVKRGMLRILPVKLRSMSQTIGIVTRKGGQLSRAGEMFVRML 309 D++SIL +A+ + +G L IL + ++G+ RK S A F+ L Sbjct: 245 DMISILSLRLAQRYASQGQLAILNLPKIEQKGSVGMFWRKNETPSLALSRFLYFL 299