BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1141.p         (189 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA4092 [R] COG1853 Conserved protein/domain typically associated...   208   6e-54
YPO1770 [R] COG1853 Conserved protein/domain typically associate...   191   1e-48
PM1522 [R] COG1853 Conserved protein/domain typically associated...   183   2e-46
STM1098 [R] COG1853 Conserved protein/domain typically associate...   182   5e-46
NMA0614 [R] COG1853 Conserved protein/domain typically associate...   141   7e-34

>PA4092 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Pae
           Pseudomonas aeruginosa
          Length = 170

 Score =  208 bits (529), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 98/162 (60%), Positives = 125/162 (77%), Gaps = 1/162 (0%)

Query: 24  LAPEQLEFRNAMAHLPAAVSIITTDGEGGRCGITASAVCSVTDTPPTILVCINRGSAMHD 83
           L P Q  FRNAMAHL AAV++IT++G  GRCGITA+AVCSVTD+PPT+++CINR S M+ 
Sbjct: 4   LEPRQQAFRNAMAHLSAAVNVITSNGPAGRCGITATAVCSVTDSPPTLMLCINRNSEMNT 63

Query: 84  VFKNNGRLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEAPGELGQPVLADALVKLQ 143
           VFK NGRLCVNVLS E E++A HF+G T+VPME RFA   W   G  G PVL  AL  LQ
Sbjct: 64  VFKANGRLCVNVLSGEHEEVARHFAGMTEVPMERRFALHDWR-EGLAGLPVLHGALANLQ 122

Query: 144 GRIREFKEVGTHSVMFVELAEVRVNEKKDSLIYFNRLFHKVK 185
           GRI E +E+GTHSV+ +EL +++V E+ D L+YF+R FH+++
Sbjct: 123 GRIAEVQEIGTHSVLLLELEDIQVLEQGDGLVYFSRSFHRLQ 164


>YPO1770 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Ype Yersinia
           pestis
          Length = 165

 Score =  191 bits (484), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 89/158 (56%), Positives = 114/158 (72%), Gaps = 1/158 (0%)

Query: 27  EQLEFRNAMAHLPAAVSIITTDGEGGRCGITASAVCSVTDTPPTILVCINRGSAMHDVFK 86
             L FR+AMA L AAV+I+TTDG  GRCGITA+AVCSVTDTPPT+++CINR SAM+ VF+
Sbjct: 7   HHLCFRDAMACLSAAVNIVTTDGPAGRCGITATAVCSVTDTPPTLIICINRNSAMNPVFQ 66

Query: 87  NNGRLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEAPGELGQPVLADALVKLQGRI 146
            NG LC+NVL+ + E +A HF+G T   MEERF+WDIW   G LGQP+L D L  L+G I
Sbjct: 67  QNGCLCINVLNHQQEPMARHFAGMTGSSMEERFSWDIWNV-GLLGQPLLRDTLASLEGVI 125

Query: 147 REFKEVGTHSVMFVELAEVRVNEKKDSLIYFNRLFHKV 184
            + + +GTH V  V + ++ + E+   LIYF R FH V
Sbjct: 126 EQVQTIGTHLVYLVHITQIVLREQGHGLIYFKRHFHPV 163


>PM1522 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Pmu
           Pasteurella multocida
          Length = 168

 Score =  183 bits (464), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 89/163 (54%), Positives = 117/163 (71%), Gaps = 2/163 (1%)

Query: 24  LAPEQLEFRNAMAHLPAAVSIITTDGEGGRCGITASAVCSVTDTPPTILVCINRGSAMHD 83
           L P Q  FRN+MA L A V+IITT+G  G+CGITA+AVCSVTDTPPTI+VCIN+ S M+ 
Sbjct: 2   LTPIQQHFRNSMAKLAAGVNIITTNGIAGKCGITATAVCSVTDTPPTIMVCINKNSEMNP 61

Query: 84  VFKNNGRLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIW-EAPGELGQPVLADALVKL 142
           VF+ N RLCVNVLS E  +LA HF+G     M+ERF W +W E    +  P L +AL  L
Sbjct: 62  VFQTNKRLCVNVLSAEQLELAQHFAGFMGSCMDERFEWAVWHEKQDPVAPPSLKNALANL 121

Query: 143 QGRIREFKEVGTHSVMFVELAEVRVNEKKD-SLIYFNRLFHKV 184
            G I + +++GTHS+  VEL E++VNE+++ +L+YF+R FH V
Sbjct: 122 TGTIVDIRDIGTHSMFLVELEEIQVNEEQEHALVYFSRQFHTV 164


>STM1098 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family Sty Salmonella
           typhimurium LT2
          Length = 170

 Score =  182 bits (461), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/159 (54%), Positives = 113/159 (71%), Gaps = 1/159 (0%)

Query: 27  EQLEFRNAMAHLPAAVSIITTDGEGGRCGITASAVCSVTDTPPTILVCINRGSAMHDVFK 86
           ++L FR+AMA L AAV+I+TT G  GRCGITA+AVCSVTDTPP+++VCIN  SAM+ VF+
Sbjct: 6   QRLRFRDAMASLAAAVNIVTTAGHAGRCGITATAVCSVTDTPPSVMVCINANSAMNPVFQ 65

Query: 87  NNGRLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEAPGELGQPVLADALVKLQGRI 146
            NGRLC+NVL+ E E +A HF+G T + MEERF    W+  G LGQPVL  AL  L+G I
Sbjct: 66  GNGRLCINVLNHEQELMARHFAGMTGMAMEERFHQPCWQN-GPLGQPVLNGALAGLEGEI 124

Query: 147 REFKEVGTHSVMFVELAEVRVNEKKDSLIYFNRLFHKVK 185
            E + +GTH V  V +  + +++    LIYF R FH V+
Sbjct: 125 SEVQTIGTHLVYLVAIKNIILSQDGHGLIYFKRRFHPVR 163


>NMA0614 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family NmA Neisseria
           meningitidis Z2491
          Length = 166

 Score =  141 bits (356), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 72/155 (46%), Positives = 97/155 (62%), Gaps = 2/155 (1%)

Query: 28  QLEFRNAMAHLPAAVSIITTDGEGGRCGITASAVCSVTDTPPTILVCINRGSAMHDVFKN 87
           Q  FR+AMA   A V +ITTDG  GR GIT +AV  VTD PPT+++CINR + +  +   
Sbjct: 9   QTSFRDAMASCAAGVHVITTDGAAGRYGITMTAVAPVTDEPPTVMLCINRSARIIPILSE 68

Query: 88  NGRLCVNVLSDELEQLAMHFSGATKVPMEERFAWDIWEAPGELGQPVLADALVKLQGRIR 147
           NG LC+N L+DE + +A HF+G T +  EERFA+ IW   G+ GQ  +  AL  L G I 
Sbjct: 69  NGSLCINTLADEHQDVAEHFAGLTGLSPEERFAYHIWHR-GKTGQLEIEGALAHLHGHIV 127

Query: 148 EFKEVGTHSVMFVELAEVR-VNEKKDSLIYFNRLF 181
              E+GTH V +V L E++    K+ +L+YF R F
Sbjct: 128 GKHEIGTHFVFYVRLDEIKNCGCKRPALLYFRRQF 162