BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1140.p (210 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGc2066 [T] COG4566 Response regulator Atu Agrobacterium tumefac... 174 9e-44 CC0758 Non COG 159 4e-39 PA4196 [T] COG4566 Response regulator Pae Pseudomonas aeruginosa 158 9e-39 AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaci... 157 2e-38 RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum 153 3e-37 >AGc2066 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 202 Score = 174 bits (442), Expect = 9e-44, Method: Compositional matrix adjust. Identities = 89/189 (47%), Positives = 122/189 (64%) Query: 8 VYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLSCLILDVRMPEISGFQL 67 VY+VDDD+AVR +L LLS+V I+ + F P FL A CLI D+RMP I+G +L Sbjct: 5 VYLVDDDDAVRKALILLLSTVGIKAKGFADPVVFLGQLPALEPGCLIFDIRMPAITGLKL 64 Query: 68 QDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLKNVAGN 127 Q++L E G D PVI +SGHG+I RA HNGAVDFL KP + Q +++ IQ + +A Sbjct: 65 QEKLAEEGVDWPVIVISGHGNIEACRRAFHNGAVDFLSKPVDEQDLIDAIQKAHRILAST 124 Query: 128 MQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVHRASVKDKLG 187 + A+ + +A L LT REREILE++ +G +S+ IA L +S +TVD HRA++ KLG Sbjct: 125 LDAKALHAETRALLALLTAREREILERIALGFTSRQIADGLGLSPRTVDSHRAAIGLKLG 184 Query: 188 CQSTATLVR 196 S A + R Sbjct: 185 TTSQAEMTR 193 >CC0758 Non COG Length = 202 Score = 159 bits (402), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 79/194 (40%), Positives = 125/194 (64%), Gaps = 1/194 (0%) Query: 3 TNPPVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLSCLILDVRMPEI 62 T+ PVV++VDDDE+ R SLA+LL S + + AFL A +I DVRMPE+ Sbjct: 2 TDAPVVHVVDDDESARESLAFLLESADFEVVAYASAPAFLDALPQARPGVVITDVRMPEM 61 Query: 63 SGFQLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLK 122 SG L RL + +P++ ++GHGDIPM+V A+ +G +DFLEKP++ +ML+ ++ Sbjct: 62 SGQDLVARLSALKVKMPIVMITGHGDIPMAVEAMRSGVIDFLEKPFSESRMLDALKRAFA 121 Query: 123 NVAGNMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVHRASV 182 V + ++ LK R+++L+ RER++L+ V+ G ++K+IARDL IS +TV+++RA + Sbjct: 122 TVEAAPVSDDQAVILK-RIESLSERERQVLDGVVAGHANKVIARDLGISPRTVEIYRAKL 180 Query: 183 KDKLGCQSTATLVR 196 K+ + A LVR Sbjct: 181 MTKMQADNLAALVR 194 >PA4196 [T] COG4566 Response regulator Pae Pseudomonas aeruginosa Length = 214 Score = 158 bits (399), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 82/189 (43%), Positives = 117/189 (61%) Query: 7 VVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLSCLILDVRMPEISGFQ 66 +VY+VDDD+ + S WLL SV ++ F FL A + +C++LDVRMP + G Sbjct: 8 LVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMGGLN 67 Query: 67 LQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLKNVAG 126 +QD L G D+PVIFVSGH D+P+ VRA GAVDF+EKPYN Q +L+ +Q L A Sbjct: 68 VQDELLARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHAR 127 Query: 127 NMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVHRASVKDKL 186 + + L RL +LT RER++L ++ G +S+ +A L +SVKTVD++RA V ++ Sbjct: 128 RRRHHDLDAGLHERLDSLTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRM 187 Query: 187 GCQSTATLV 195 Q+ LV Sbjct: 188 QAQTLPELV 196 >AGl218 [T] COG4566 Response regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 218 Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 81/191 (42%), Positives = 118/191 (61%) Query: 6 PVVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFLKAYDANSLSCLILDVRMPEISGF 65 PVV+IVDDD ++R +L L S+ E FD AFL+ + N CL+LDVR+P ISG Sbjct: 14 PVVFIVDDDVSMREALTDLFRSMKFDAEAFDSAAAFLEKANLNRHGCLLLDVRLPGISGL 73 Query: 66 QLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLKNVA 125 Q +L+ +G +P+IF++G GDIPMSVRA+ GAVDFL KP+ Q +L+ + ++ A Sbjct: 74 DFQVQLERVGNRMPIIFMTGFGDIPMSVRAMKAGAVDFLTKPFKEQDILDAVAAAMERDA 133 Query: 126 GNMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVHRASVKDK 185 + + + + + LT RERE++ V+ G +K IA +L IS TV +HR +V K Sbjct: 134 SRRRESAQNEAVTSLAGQLTPREREVMGAVVRGLMNKQIAYELGISEVTVKLHRGNVMRK 193 Query: 186 LGCQSTATLVR 196 + +S A LVR Sbjct: 194 MEARSVADLVR 204 >RSc1597 [T] COG4566 Response regulator Rso Ralstonia solanacearum Length = 210 Score = 153 bits (386), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 77/191 (40%), Positives = 115/191 (60%), Gaps = 1/191 (0%) Query: 7 VVYIVDDDEAVRTSLAWLLSSVNIRTECFDGPGAFL-KAYDANSLSCLILDVRMPEISGF 65 V++VDDDEA+R SL WLL + FL + CLILDVRM +SG Sbjct: 14 TVFVVDDDEAMRDSLTWLLEGNGYNVRTYRSAEEFLVDDKRGEGVGCLILDVRMQGMSGP 73 Query: 66 QLQDRLKEIGADIPVIFVSGHGDIPMSVRALHNGAVDFLEKPYNSQQMLERIQLTLKNVA 125 +LQDRL +P++FV+GHGD+PM+V + GAVDF+EKP++ ++ E ++ L Sbjct: 74 ELQDRLLAENNRMPIVFVTGHGDVPMAVSTMKKGAVDFIEKPFDESELRELVERMLSKAR 133 Query: 126 GNMQARERRQQLKARLKTLTVREREILEKVIMGQSSKLIARDLNISVKTVDVHRASVKDK 185 A ++ L LT RE+++LE+++ G+ +K IA DL IS+KTV+ HRA++ +K Sbjct: 134 TEDSAAREQKAANDLLSRLTTREQQVLERIVAGRLNKQIADDLGISIKTVEAHRANIMEK 193 Query: 186 LGCQSTATLVR 196 L + A L+R Sbjct: 194 LNVNTVADLLR 204