BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1125.p (311 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA2507 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit ... 320 3e-87 AGc4592 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit... 127 3e-29 Cgl2351 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit... 124 2e-28 Cgl2996 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit... 106 7e-23 Cgl1134 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit... 104 3e-22 >PA2507 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Pae Pseudomonas aeruginosa Length = 310 Score = 320 bits (820), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 170/309 (55%), Positives = 217/309 (70%), Gaps = 4/309 (1%) Query: 1 MAAKIFSTPEVQDFLRLASGLDTEGGNPRVKQIVHRILSDLFKTIEDLEITSDEYWAGVA 60 M KI T +VQ F ASG E G+PR K +V RIL D K IE++++T DE+W V Sbjct: 1 MTVKISQTADVQRFFEEASGQLNERGDPRTKALVRRILDDTAKLIEEMQVTPDEFWKAVD 60 Query: 61 YINRLGTASEGGLLSPGLGLDRFLDMRMDAEDAAQGITGGTPRTIEGPLYVAGAPVEQGF 120 Y+NRLG+ E GLL+ GLGL+ +LD+ +DA+DA G+TGGTPRTIEGPLYVAGAP+ G Sbjct: 61 YLNRLGSRQEAGLLAAGLGLEHYLDLLLDAQDAEAGLTGGTPRTIEGPLYVAGAPLSDGE 120 Query: 121 ARLDDGSDKNGHTIIMHGTIYGADGKPMPGAQVEVWHANTKGFYSHFDPTGEQKPFNMRR 180 AR+DDG D G + + G + G DG+P+ GA V+VWHANT+G YS+FD + Q +N+RR Sbjct: 121 ARMDDGRDA-GTVMFLQGRVSGPDGQPLAGAIVDVWHANTQGTYSYFDSS--QSEYNLRR 177 Query: 181 TIITDAQGRYKFRSIMPAAYGCPPAGPTQALLNQLGRHGNRPAHIHFFVTADGHRKLTTQ 240 I TDA GRY+ RSI+P+ YGCP GPTQ LL++LGRHG RPAHIHFFV+A GHR LTTQ Sbjct: 178 RIRTDADGRYRARSIVPSGYGCPSDGPTQELLDRLGRHGQRPAHIHFFVSAPGHRHLTTQ 237 Query: 241 INIDGDPLIYDDFAYATREGLVPPLVERTDAASIKAEGLE-GPFAEIVFDMTLTSLVNGA 299 IN+ GD ++DDFAYATR+GL+ L D A+ + G+E G FAE+ FD L + A Sbjct: 238 INLAGDRYLWDDFAYATRDGLIGDLRFNDDPAAARDRGVEGGRFAELDFDFQLQASPAPA 297 Query: 300 DNQIVDRPR 308 + RPR Sbjct: 298 AERRSQRPR 306 >AGc4592 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 295 Score = 127 bits (320), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 81/262 (30%), Positives = 128/262 (48%), Gaps = 13/262 (4%) Query: 27 NPRVKQIVHRILSDLFKTIEDLEITSDEYWAGVAYINRLGTAS-----EGGLLSPGLGLD 81 +PR+K+I+ + L + ++++E T +E+ + ++ +G E L S LG+ Sbjct: 30 DPRLKEIMAVVTRKLHEAVKEIEPTEEEWMKAIHFLTEVGQICNEWRQEWILFSDILGVS 89 Query: 82 RFLDMRMDAEDAAQGITGGTPRTIEGPLYVAGAPVEQGFARLDDGSDKNGHTIIMHGTIY 141 M +DA + + +G + T+ GP +VA AP A + D G +++ G I Sbjct: 90 ----MLVDAINHRKP-SGASESTVLGPFHVADAPEMPMGANI--CLDGKGEDMVVTGRIL 142 Query: 142 GADGKPMPGAQVEVWHANTKGFYSHFDPTGEQKPFNMRRTIITDAQGRYKFRSIMPAAYG 201 +G P+ GA+++VW AN +GFY G Q FN+R +T GRY FR+ P Y Sbjct: 143 DTEGAPVAGARIDVWQANDEGFYD-VQQKGIQPDFNLRGVFVTGEDGRYWFRAAKPKYYP 201 Query: 202 CPPAGPTQALLNQLGRHGNRPAHIHFFVTADGHRKLTTQINIDGDPLIYDDFAYATREGL 261 P GP LL +GRH RPAH+H+ V+A+ L T I DP I D + +E L Sbjct: 202 IPDDGPVGRLLRAMGRHPYRPAHLHYIVSAESFTTLVTHIFDPDDPYIRSDAVFGVKESL 261 Query: 262 VPPLVERTDAASIKAEGLEGPF 283 + D + G G + Sbjct: 262 LANFDRVEDREKAQELGFAGDW 283 >Cgl2351 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Cgl Corynebacterium glutamicum Length = 285 Score = 124 bits (312), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/246 (31%), Positives = 125/246 (50%), Gaps = 8/246 (3%) Query: 18 ASGLDTEGGNPRVKQIVHRILSDLFKTIEDLEITSDEYWAGVAYINRLGTASEGGLLSPG 77 A+ + ++ R I +L+ + + E+T +EY ++ +G E L Sbjct: 25 ANRVSSDTSKERANAIYVDLLAAIAQVAHKHEVTYEEYAVLKQWMIDVGEYGEWPLW--- 81 Query: 78 LGLDRFLDMRMDAEDAAQGITGGTPRTIEGPLYVAGAPVEQGFARLD-DGSDKNGHTIIM 136 LD F++ ++ + + GT +IEGP YV +P A + D+ +I Sbjct: 82 --LDVFVEHEIEEINYNRHDYTGTKGSIEGPYYVENSPKLPWDAEMPMRDKDRACTPLIF 139 Query: 137 HGTIYGADGKPMPGAQVEVWHANTKGFYSHFDPTGEQKPFNMRRTIITDAQGRYKFRSIM 196 G + DG + GA+VE+WHA+ G+YS F P + +N+R TI+TD +GRYK +++ Sbjct: 140 EGQVTDLDGNGLDGAEVELWHADEDGYYSQFAPGIPE--WNLRGTIVTDEEGRYKIKTLQ 197 Query: 197 PAAYGCPPAGPTQALLNQLGRHGNRPAHIHFFVTADGHRKLTTQINIDGDPLIYDDFAYA 256 PA Y P GPT + G H RPAH+H V+ G+R +TTQ+ +G + +D A A Sbjct: 198 PAPYQIPHDGPTGWFIESYGGHPWRPAHLHLRVSHPGYRTITTQLYFEGGEWVENDVATA 257 Query: 257 TREGLV 262 + LV Sbjct: 258 VKPELV 263 >Cgl2996 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Cgl Corynebacterium glutamicum Length = 301 Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 77/249 (30%), Positives = 117/249 (46%), Gaps = 18/249 (7%) Query: 27 NPRVKQIVHRILSDLFKTIEDLEITSDEYWAGVAYINRLGTAS-----EGGLLSPGLGLD 81 NPR+KQ++ ++ L I D+ +T DE+ + ++ +G + E LLS LG Sbjct: 34 NPRLKQLMESLVVHLHDFIRDVRLTEDEWNYAIDFLTAVGHITDDKRQEFVLLSDTLGAS 93 Query: 82 RFLDMRMDAEDAAQGITGGTPRTIEGPLYVAGAP-VEQGFARLDDGSDKNGHTIIMHGTI 140 M+ A + + T T+ GP ++ AP VE G D G + GT+ Sbjct: 94 ----MQTIAVNN-EAYENSTEATVFGPFFLDDAPEVELGG---DIAGGAQGQAAWIEGTV 145 Query: 141 YGADGKPMPGAQVEVWHANTKGFYSHFDPTGEQKPFNMRRTIITDAQGRYKFRSIMPAAY 200 +G P+P A++EVW + G Y D + R + TDA G Y+F + P Y Sbjct: 146 TDTEGNPVPNARIEVWECDEDGLY---DVQYADERMAGRAYMHTDANGDYRFWGLTPVPY 202 Query: 201 GCPPAGPTQALLNQLGRHGNRPAHIHFFVTADGHRKLTTQINIDGDP-LIYDDFAYATRE 259 P GP +L +GR R AH+HF VTA R L T I ++GDP L D + ++ Sbjct: 203 PIPHDGPVGNMLKAVGRSPVRCAHLHFMVTAPELRTLVTHIFVEGDPQLEIGDSVFGVKD 262 Query: 260 GLVPPLVER 268 L+ E+ Sbjct: 263 SLIKKFEEQ 271 >Cgl1134 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Cgl Corynebacterium glutamicum Length = 295 Score = 104 bits (259), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 121/259 (46%), Gaps = 17/259 (6%) Query: 16 RLASGLDTEGGNPRVKQIVHRILSDLFKTIEDLEITSDEYWAGVAYINRLGTAS-----E 70 R+ + D+ NPR+K ++ + L I D+ +T +E+ + ++ ++G + E Sbjct: 17 RVLASFDS-CENPRLKLVMKSLTVHLHDFIRDVRLTEEEWNYAIDFLTKVGHITDDKRQE 75 Query: 71 GGLLSPGLGLDRFLDMRMDAEDAAQGITGGTPRTIEGPLYVAGAPVEQGFARLDDGSDKN 130 LLS LG M+ A + + T T+ GP +V AP+ Q + G+ Sbjct: 76 FVLLSDTLGAS----MQTIAVNN-EAYEDATEATVFGPFFVDDAPLVQNGDDIAFGA--V 128 Query: 131 GHTIIMHGTIYGADGKPMPGAQVEVWHANTKGFYSHFDPTGEQKPFNMRRTIITDAQGRY 190 G + GT+ +G P+P A++EVW + G Y D + R + +D G Y Sbjct: 129 GQPAWVEGTVKDTEGNPIPNARIEVWECDEDGLY---DVQYADERSAGRAHLYSDENGEY 185 Query: 191 KFRSIMPAAYGCPPAGPTQALLNQLGRHGNRPAHIHFFVTADGHRKLTTQINIDGDP-LI 249 F + P Y P GP +L +GR R AH+HF VTA R L T I ++GDP L Sbjct: 186 HFWGLTPVPYPIPHDGPVGQMLQAVGRSPVRCAHLHFMVTAPEKRTLVTHIFVEGDPQLE 245 Query: 250 YDDFAYATREGLVPPLVER 268 D + ++ L+ VE+ Sbjct: 246 IGDSVFGVKDSLIKKFVEQ 264