BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1094.p (306 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 140 5e-33 PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 133 4e-31 AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium t... 125 2e-28 mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium ... 106 7e-23 RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 104 2e-22 >PA3778 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 311 Score = 140 bits (352), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 93/291 (31%), Positives = 145/291 (49%), Gaps = 1/291 (0%) Query: 9 LEETAVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAA 68 L + A+ Y EV+ GS+ AA LN+ SAISRQ++ LE+ L L +R +G+ P A Sbjct: 4 LSQRALAYLNEVIHHGSLRRAAQHLNIDPSAISRQLASLEEHLGVRLLQRTPQGVAPTEA 63 Query: 69 GELLAAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGI 128 GELL AH + + E V + L+AL+GLR+G+V+LA EGF + + + F R+ GI Sbjct: 64 GELLVAHYRQQRANEEGVLSRLSALQGLRQGKVRLAVGEGFIADLISQPLQSFILRYPGI 123 Query: 129 RFHLSVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAG-RK 187 + + A LV+E VDL L + D ++ V + P+ ++ +H LAG R Sbjct: 124 ELEVRMAGANEGVALVKEDAVDLALVYAPVEDGELDVHVDTRQPLDLIIPANHALAGHRG 183 Query: 188 RVSLSELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGF 247 V + L L + + M +L + L P L +S++ L +FV SG GV F Sbjct: 184 AVPMRALRNESLALIHNSTGMGQLAVIAAQLERIELRPKLRTNSVAVLTNFVKSGIGVAF 243 Query: 248 SAQIPIREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTL 298 ++ + + + +P+ + I S GR L AA + L L Sbjct: 244 MPELTVSHEIEAGHIRCLPLAHPALRDARARIVSHKGRELTVAAIACLEHL 294 >PA0233 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 313 Score = 133 bits (335), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 90/278 (32%), Positives = 143/278 (51%) Query: 13 AVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELL 72 A+ YF V R SI EAA LNVASSA++RQI +LED + PLF+R+ G+R AGE+ Sbjct: 11 AIHYFDMVRRCHSIREAARRLNVASSAVNRQILKLEDEIGAPLFDRLPGGLRLTGAGEIF 70 Query: 73 AAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHL 132 A H + + ERV +EL AL+GLR G V++A E + +P + RER+ I + Sbjct: 71 ARHVTVVLQDMERVRSELDALQGLRTGHVEIATIEAVTSDLLPCVLKAMRERYPDITVGV 130 Query: 133 SVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKRVSLS 192 ++ ++++ + V G VDLGL F L D++ + A++ P H LA + ++ + Sbjct: 131 TLLGSQAIPEAVSSGAVDLGLAFALPRSADLQQVSVGHFRLGAIVSPQHPLARHQAIAFA 190 Query: 193 ELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGFSAQIP 252 + ++ L M K +++ L+ R L + S+ G GV F ++ Sbjct: 191 DCVEHGLIMAKSELSIHHLLAPLQRRLREPRRAVLESSSLELSRQLARRGLGVAFQTRLG 250 Query: 253 IREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQA 290 I + +L +P+KD L + +GR LP A Sbjct: 251 IEADIAQGELRFLPLKDNGGIHSDLGLYVRTGRYLPVA 288 >AGl862 [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 332 Score = 125 bits (313), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 81/258 (31%), Positives = 127/258 (49%) Query: 13 AVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELL 72 A+ YF E+VR S+ AA LNVA +A+SRQI LE +PL ER SRG++ AAGELL Sbjct: 37 ALMYFDELVRTNSMRAAAENLNVAPTAVSRQIENLEYYFGSPLVERSSRGVKLTAAGELL 96 Query: 73 AAHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHL 132 AA A + E + V + LKGL+RG V + + +AQF ++ +RF + Sbjct: 97 AARAGKTLRELDHVHRLIDDLKGLQRGRVTVYANGATVANLLAPVLAQFSLKYPKLRFEV 156 Query: 133 SVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLAGRKRVSLS 192 + +A+ + + DL ++ +KV + + H LA + VSL Sbjct: 157 HITSARQAMEALGAAEADLVVSLFAPKLSGVKVRSRTRISYDVIFPAGHALAAQPEVSLK 216 Query: 193 ELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGFSAQIP 252 ELA PL +P K+ R+ D + + + L+P S+ L V+ + Sbjct: 217 ELAGMPLALPDKSFAARQAFDTLFADAGIELDPVFITSSLEMLKELVLGNAAATLLPALS 276 Query: 253 IREYLRTRKLVAVPIKDK 270 + +R+ ++VAVP+ K Sbjct: 277 VAREIRSGQMVAVPLAGK 294 >mlr6981 [K] COG0583 Transcriptional regulator Mlo Mesorhizobium loti Length = 299 Score = 106 bits (264), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 93/304 (30%), Positives = 139/304 (45%), Gaps = 19/304 (6%) Query: 3 SSNTRILEETAVRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRG 62 S N IL+ +R FL VV S AA L+++ A+SR+I +LE A+ P+ ER +R Sbjct: 2 SINCEILD---LRAFLSVVELESFHRAAEALHLSQPALSRRIQKLEQAIGAPILERTTRH 58 Query: 63 MRPNAAGELLAAHALRMQLEAERVGNELAALKGL---RRGEVKLACTEGFALEFVPHAIA 119 + A G L RM E L A++ + R G V +AC A F+P I Sbjct: 59 VSATALGIELVPLVRRM---LEEFDGSLFAVRDVGTNRGGLVTIACLPTAAFYFLPTVIR 115 Query: 120 QFRERHRGIRFHLSVGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHP 179 QF E + IRF + A Q V G V+ G+ M DPD+ + + P + Sbjct: 116 QFNEEYPNIRFRILDLPATDGLQAVARGEVEFGINIMGTSDPDLTFDRLAEDPFVLAARR 175 Query: 180 DHVLAGRKRVSLSELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFV 239 DH LA + V ++L Y L ++ R L+DA ++SN+ L +S L V Sbjct: 176 DHPLAAKPSVGWADLEPYHLITVHRSSGNRTLLDAALAKSNIKLRWFYEVTHLSTSLGLV 235 Query: 240 MSGNGVGFSAQIPI----REYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFL 295 +G G+ ++ +L TR PI+D +++ + + G TL AA FL Sbjct: 236 EAGLGISVLPRMATPGGDHPFLITR-----PIRDPEISR-TIGVVRRRGGTLSPAAERFL 289 Query: 296 NTLI 299 LI Sbjct: 290 KMLI 293 >RSp1571 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 324 Score = 104 bits (260), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/286 (25%), Positives = 137/286 (47%), Gaps = 1/286 (0%) Query: 14 VRYFLEVVRRGSITEAAITLNVASSAISRQISRLEDALDTPLFERISRGMRPNAAGELLA 73 +R F ++ S+ +AA L ++ S +SR ++ +ED + LF+R + G+ P A L Sbjct: 9 MRVFHAILEHRSVRKAADQLEMSRSLVSRYLTEMEDMIGGRLFDRTATGLMPTDAVPYLL 68 Query: 74 AHALRMQLEAERVGNELAALKGLRRGEVKLACTEGFALEFVPHAIAQFRERHRGIRFHLS 133 +A M+ E++ +++ L+ L++G + ++ +EG + +A F +++ G+ L+ Sbjct: 69 EYARGMEASQEKLLDQMHQLRSLQKGNLLISLSEGLVDTLMEDVLAGFMKKYPGVEVVLN 128 Query: 134 VGNAKSVAQLVREGTVDLGLTFMLAPDPDIKVEFSQKAPIMAVMHPDHVLA-GRKRVSLS 192 + + V +GL + I S I+A +HP+H LA V L+ Sbjct: 129 MRATAEIINDVATNEAHIGLAYNPPMTSGIAFCASAVHHIVAAVHPEHPLARCDDPVPLA 188 Query: 193 ELAQYPLGMPKKNITMRRLIDACCSRSNVVLEPALSADSISALLSFVMSGNGVGFSAQIP 252 + YP+G+ + LI N+ L P +A+++ AL ++ GV F Sbjct: 189 QALAYPVGIMPPAFGLGLLIRTIAKAENLNLTPNFNANTLMALRAYARHTRGVAFITDFS 248 Query: 253 IREYLRTRKLVAVPIKDKDMNALYLEIQSLSGRTLPQAARSFLNTL 298 IR+ + LV VP+K Y + GR LP+AA+ +N++ Sbjct: 249 IRKEVAAGLLVGVPLKHPLAENQYARVMVKEGRPLPRAAQEVINSI 294