BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1082.p         (53 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2507 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit ...    44   1e-04
jhp1125 [J] COG0080 Ribosomal protein L11 jHp Helicobacter pylor...    32   0.25 
HP1202 [J] COG0080 Ribosomal protein L11 Hpy Helicobacter pylori...    32   0.25 

>PA2507 [Q] COG3485 Protocatechuate 3,4-dioxygenase beta subunit Pae
          Pseudomonas aeruginosa
          Length = 310

 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 22/51 (43%), Positives = 31/51 (60%)

Query: 1  MTAKISDTPEVEDFLRLASGLEQDGGNPRTRQIAHRILSDLFKAIEDLNAS 51
          MT KIS T +V+ F   ASG   + G+PRT+ +  RIL D  K IE++  +
Sbjct: 1  MTVKISQTADVQRFFEEASGQLNERGDPRTKALVRRILDDTAKLIEEMQVT 51


>jhp1125 [J] COG0080 Ribosomal protein L11 jHp Helicobacter pylori J99
          Length = 141

 Score = 32.3 bits (72), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 5   ISDTPEVEDFLRLASGLEQDGGNPRTRQIA---HRILSDLFK-AIEDLNAS 51
           I+  P V D ++ ASG+E+   NP   +IA   H+ + ++ +  +EDLN S
Sbjct: 69  ITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTS 119


>HP1202 [J] COG0080 Ribosomal protein L11 Hpy Helicobacter pylori 26695
          Length = 141

 Score = 32.3 bits (72), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)

Query: 5   ISDTPEVEDFLRLASGLEQDGGNPRTRQIA---HRILSDLFK-AIEDLNAS 51
           I+  P V D ++ ASG+E+   NP   +IA   H+ + ++ +  +EDLN S
Sbjct: 69  ITKKPPVTDLIKKASGVEKGSDNPLKNKIAKLTHKQVEEIAQLKMEDLNTS 119