BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1078.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

YPO2237 [GEPR] COG0477 Permeases of the major facilitator superf...   200   9e-52
RSc2352 [GEPR] COG0477 Permeases of the major facilitator superf...   199   2e-51
BMEII1096 [GEPR] COG0477 Permeases of the major facilitator supe...   198   3e-51
PA4126 [GEPR] COG0477 Permeases of the major facilitator superfa...   178   3e-45
RSp0182 [GEPR] COG0477 Permeases of the major facilitator superf...   172   2e-43

>YPO2237 [GEPR] COG0477 Permeases of the major facilitator superfamily Ype
           Yersinia pestis
          Length = 436

 Score =  200 bits (508), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 112/144 (77%), Gaps = 3/144 (2%)

Query: 2   STSTAALGT---VPETTGIYRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSD 58
            +ST +L     + E    YRK  + +LP L++CY   YLDRVNV FAKLQMA  LQFSD
Sbjct: 3   ESSTESLSQPTQLQEENNAYRKTVWHLLPLLMLCYVLNYLDRVNVGFAKLQMADDLQFSD 62

Query: 59  AVYGLGAGIFFIGYFIFEVPSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVM 118
            VYGLGAG+FFIGYF  E+PSNLI+ RVGA+ WI+RIM+TWG++SA MAFVTT   FYVM
Sbjct: 63  TVYGLGAGMFFIGYFFLEIPSNLILHRVGARLWIARIMITWGIISACMAFVTTPMSFYVM 122

Query: 119 RFLLGAAEAGFFPGVLLYLSYWFP 142
           RFLLG AEAGFFPG++LY+SYWFP
Sbjct: 123 RFLLGVAEAGFFPGIILYISYWFP 146


>RSc2352 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 442

 Score =  199 bits (506), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 89/125 (71%), Positives = 110/125 (88%)

Query: 18  YRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSDAVYGLGAGIFFIGYFIFEV 77
           YRK++++++PFLL+CY  AYLDRVNV FAKLQM   L+FS+ VYGLGAGIFFIGYF+FEV
Sbjct: 28  YRKVSWRLIPFLLLCYVVAYLDRVNVGFAKLQMLNDLKFSETVYGLGAGIFFIGYFLFEV 87

Query: 78  PSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVMRFLLGAAEAGFFPGVLLYL 137
           PSN+I+ RVGA+ WI+RIM++WGL+SA M FVTT   FYVMRFLLG AEAGFFPG++LYL
Sbjct: 88  PSNVILHRVGARMWIARIMISWGLISAAMMFVTTPAMFYVMRFLLGLAEAGFFPGIILYL 147

Query: 138 SYWFP 142
           +YW+P
Sbjct: 148 TYWYP 152


>BMEII1096 [GEPR] COG0477 Permeases of the major facilitator superfamily Bme
           Brucella melitensis
          Length = 451

 Score =  198 bits (504), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 93/144 (64%), Positives = 117/144 (81%), Gaps = 3/144 (2%)

Query: 1   MSTSTAALGTVPETTG--IYRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSD 58
           M  S  A+ T PE      YRK+ F+I+P L+ICY  AYLDRVNV FAKLQM++ L FS+
Sbjct: 19  MKNSNTAI-TSPEVVENMTYRKVAFRIIPLLMICYIIAYLDRVNVGFAKLQMSEELGFSE 77

Query: 59  AVYGLGAGIFFIGYFIFEVPSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVM 118
           A+YGLGAG+FFIGYF FE+PSN+++ ++GA+ WI+RIM+TWGLLSA  AFV T  QFY++
Sbjct: 78  AIYGLGAGLFFIGYFFFEIPSNILLHKLGARLWIARIMITWGLLSALFAFVQTEWQFYIL 137

Query: 119 RFLLGAAEAGFFPGVLLYLSYWFP 142
           RFLLGAAEAGF+PGV+LYL+YWFP
Sbjct: 138 RFLLGAAEAGFYPGVILYLTYWFP 161


>PA4126 [GEPR] COG0477 Permeases of the major facilitator superfamily Pae
           Pseudomonas aeruginosa
          Length = 434

 Score =  178 bits (452), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 81/143 (56%), Positives = 110/143 (76%), Gaps = 1/143 (0%)

Query: 1   MST-STAALGTVPETTGIYRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHLQFSDA 59
           MST ST    T+P +   + ++T++++P LL+CY FA+LDR+N+ FAKLQM+  L FSD 
Sbjct: 1   MSTASTLNSTTLPLSDSTHDRVTWRLMPLLLVCYVFAHLDRINIGFAKLQMSADLHFSDT 60

Query: 60  VYGLGAGIFFIGYFIFEVPSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQFYVMR 119
           VYGLGAG+FFI Y +F +PSNL++ER+G +RWI+ +M+ WG LS  M  V TA  FY++R
Sbjct: 61  VYGLGAGLFFIAYALFGLPSNLMLERIGPRRWIACLMLVWGCLSTAMLLVETARGFYLLR 120

Query: 120 FLLGAAEAGFFPGVLLYLSYWFP 142
           FLLG AEAGFFPG+L+YL+ WFP
Sbjct: 121 FLLGVAEAGFFPGILVYLNRWFP 143


>RSp0182 [GEPR] COG0477 Permeases of the major facilitator superfamily Rso
           Ralstonia solanacearum
          Length = 453

 Score =  172 bits (437), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 81/147 (55%), Positives = 106/147 (72%), Gaps = 7/147 (4%)

Query: 2   STSTAALGTV-------PETTGIYRKITFKILPFLLICYFFAYLDRVNVAFAKLQMAQHL 54
           S    A+GT+       P+   I RKIT++ILPF+   Y  +YLDR N+ +A LQM Q L
Sbjct: 7   SAGAPAVGTIAARHPAAPDERAIVRKITWRILPFVFALYIISYLDRANIGYAALQMNQEL 66

Query: 55  QFSDAVYGLGAGIFFIGYFIFEVPSNLIMERVGAKRWISRIMVTWGLLSAGMAFVTTAEQ 114
             S   +G  +GIFFIGYF+FEVPSNL++ R GA+RWI+RI+VTWGL++ G AFV +A Q
Sbjct: 67  ALSSEAFGFVSGIFFIGYFLFEVPSNLMLNRFGARRWIARILVTWGLVAMGSAFVQSATQ 126

Query: 115 FYVMRFLLGAAEAGFFPGVLLYLSYWF 141
            Y +RFLLG AEAGFFPG+++YL+YWF
Sbjct: 127 LYALRFLLGVAEAGFFPGIIVYLTYWF 153