BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1072.p (297 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA4902 [K] COG0583 Transcriptional regulator Pae Pseudomonas aer... 283 2e-76 RSp0221 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 202 1e-51 RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 187 4e-47 RSp0692 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 177 2e-44 RSp0887 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 175 1e-43 >PA4902 [K] COG0583 Transcriptional regulator Pae Pseudomonas aeruginosa Length = 298 Score = 283 bits (725), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 137/292 (46%), Positives = 201/292 (68%), Gaps = 2/292 (0%) Query: 3 IDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTFN 62 IDLNLIRTFV +YE SV+ AA+RL +TQPSVSY+L RLR+L D LFTRTR+G+ PTF Sbjct: 4 IDLNLIRTFVTLYEAGSVTLAAERLFVTQPSVSYALARLRELFDDALFTRTRDGIQPTFV 63 Query: 63 ATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAPS 122 A QL+ TF+ ++ I+ A+ + R FDP+++ RRFRIAL+DLGE FL ++ L AP Sbjct: 64 AEQLYGTFRESLTRIEGAVQSVRHFDPATTERRFRIALTDLGEVGFLSLILERLTRDAPF 123 Query: 123 VGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGAQILKRKLFTESYSCVVSTKHPTIGNS 182 +EV+ + +++G WLS++ +DAA+ GA+ +++ E Y C++S +HP IG+S Sbjct: 124 AEVEVLPLQVDEVGAWLSSAKVDAAICRQPVPGAR--SQRVLHERYVCLLSDRHPRIGDS 181 Query: 183 LSLEQYVAAKHVVVSPFTGHHLVEDVMSEMGIKPIVALRVPHFTSLLAVVATTDLMLTLP 242 LSLEQY+A +H+VV+ +GH + EDV+ M ++ ++LRVPHF+ L ++ T+L+ LP Sbjct: 182 LSLEQYLAERHIVVTRTSGHGIAEDVLEAMQVQRRISLRVPHFSVLPKIIPGTELLTILP 241 Query: 243 SRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFCETIIRAL 294 ++IA F +G MR L P +P FDV+L+W+ SE + A WF TI A+ Sbjct: 242 AQIAYRFVAEGGMRMLELPFTLPPFDVSLHWHESSERSAALNWFRTTIAEAI 293 >RSp0221 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 304 Score = 202 bits (513), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 107/290 (36%), Positives = 172/290 (59%), Gaps = 4/290 (1%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 +DLNL+ F A+Y+TR+V+ AA+ NITQP++S +L RLR++ DPLF GM PT Sbjct: 5 RLDLNLLGVFQAIYQTRNVTLAARHHNITQPAMSNALARLREVFADPLFVPGPYGMRPTP 64 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 A QL A + A+ ++ A++ ++ FDP+SS R FR+ L+D + FLP L+ L + AP Sbjct: 65 YAQQLAAPIERALREVEQALAMSKGFDPASSDREFRMHLTDFAQVAFLPALLERLRAQAP 124 Query: 122 SVGLEVIQIDSEKIGEWLSTSHIDAAVGNL-EFVGAQILKRKLFTESYSCVVSTKHPTIG 180 V + V + E I L +D A G + + G + + LF + Y+ ++ HP G Sbjct: 125 RVAIRVEALAEEAIRPALDEGRLDFAFGRMSKAAGHGVGRHALFKDRYAVLMRAGHPLAG 184 Query: 181 NSLSLEQYVAAKHVVVSPFTGHHLVEDVMSEMGIKPIVALRVPHFTSLLAVVATTDLMLT 240 +LS + +VA++ V+V +GH VED++ +MG + +ALR+P F + +V T+DLM+ Sbjct: 185 QALSRKDFVASEQVLVCT-SGHQAVEDMLVKMGAR--IALRLPSFLVVSRIVETSDLMVI 241 Query: 241 LPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFCETI 290 +P+R+A+ +A G R P+ +P+FDV+L+W A W E + Sbjct: 242 IPARLAEQYAATGLFRMAALPVAMPAFDVSLFWSESRSADPAHAWMRELL 291 >RSc1092 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 300 Score = 187 bits (474), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 97/286 (33%), Positives = 162/286 (56%), Gaps = 1/286 (0%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 +IDLNL+ F + R VSA A+ L ITQP++S +L RLR LL D LF RT GM+PT Sbjct: 5 DIDLNLLVVFNELLRQRRVSAVAETLGITQPAISNALNRLRKLLGDELFVRTSKGMIPTP 64 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 A L A+ I ++++A +F+P++STR F IA++D+GE +FLP L+R L AP Sbjct: 65 FAETLAEPIAYALGAIYNSLNATSRFEPATSTRAFTIAMTDIGEIYFLPTLMRRLARDAP 124 Query: 122 SVGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGAQILKRKLFTESYSCVVSTKHPTIGN 181 V + ++ ++ + + + +D A+G L + + +R+LF + Y C+ HP Sbjct: 125 GVTVSTVRNHADTLRDEMEAGRVDLAIGFLPDLKSGFFQRRLFRQRYVCLFRKGHPLAKR 184 Query: 182 SLSLEQYVAAKHV-VVSPFTGHHLVEDVMSEMGIKPIVALRVPHFTSLLAVVATTDLMLT 240 +++E ++ A+HV +V+ TGH +V+ + G+ V+L VPHF +L ++ +TDL+ Sbjct: 185 GMTMEGFLEAEHVSIVAEGTGHGMVDATILRAGLPRRVSLHVPHFIALGHILQSTDLIAV 244 Query: 241 LPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWF 286 +P A + + + P+ IP +N+ W+ + QW Sbjct: 245 VPQAYATRTLKPFGLDTAACPVKIPDITINVLWHARNHREPGNQWL 290 >RSp0692 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 321 Score = 177 bits (450), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 95/302 (31%), Positives = 165/302 (54%), Gaps = 6/302 (1%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 ++DLNL+ F + + ++A A+RL ++QP+VS +L RLR D LF RT GM+PT Sbjct: 18 DVDLNLLVVFQEILREKRIAAVAQRLGLSQPAVSNALARLRQTFDDELFVRTPRGMMPTA 77 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 A QL A+D +Q A F+ ++STR F IA+SD+GE +F+P L + AP Sbjct: 78 RAEQLAEPVAMALDMLQRAFGQRTHFEAATSTRTFTIAMSDVGEVYFMPVLAQLCTEQAP 137 Query: 122 SVGLEVIQIDSEKIGEWLSTSHIDAAVGNL-EFVGAQILKRKLFTESYSCVVSTKHP--- 177 V ++ ++ + + + + ID A+G + G + +R+LF + Y + HP Sbjct: 138 GVRIDTLRAGAFDMKVGMESGAIDLAIGAFDDLSGESVFQRRLFQQDYVTMFRRGHPLEP 197 Query: 178 -TIGNSLSLEQYVAAKHVVV-SPFTGHHLVEDVMSEMGIKPIVALRVPHFTSLLAVVATT 235 L+LE++ AA H+VV S + ++ + ++ + GI VPHF ++ +V+TT Sbjct: 198 AAQAGRLTLERFRAASHLVVASSASPYNAIGPLLDKAGISQSARFSVPHFVAVPYIVSTT 257 Query: 236 DLMLTLPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWYPHSEDAMAQQWFCETIIRALS 295 DL++T+P ++A+ A ++ +PPP+ +P+ N++W+ QW + R + Sbjct: 258 DLVVTVPRKLAERAAPPFRLQFVPPPLKLPALQTNVFWHRRFHQDAGNQWLRNLVARHFA 317 Query: 296 NV 297 V Sbjct: 318 EV 319 >RSp0887 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 308 Score = 175 bits (444), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 97/275 (35%), Positives = 154/275 (56%), Gaps = 3/275 (1%) Query: 2 NIDLNLIRTFVAVYETRSVSAAAKRLNITQPSVSYSLQRLRDLLQDPLFTRTRNGMLPTF 61 ++DLNL+ F +++ TR+++A +RL ++QP+VS L RLR+ D LF R R G+ PT Sbjct: 13 HLDLNLLELFESIWRTRNLTATGERLGLSQPAVSRGLARLRETYGDELFVRHRRGVEPTA 72 Query: 62 NATQLFATFKGAIDNIQDAISAARQFDPSSSTRRFRIALSDLGESHFLPYLVRELESIAP 121 A L A+ ++ I F + RRFR+ALSD+GE +FLP L L AP Sbjct: 73 FAQTLAEPVSAALAIVRRTIEKP-TFSAAEDARRFRVALSDIGERYFLPRLAAWLADHAP 131 Query: 122 SVGLEVIQIDSEKIGEWLSTSHIDAAVGNLEFVGAQILKRKLFTESYSCVVSTKHPTIGN 181 V ++ + E++ L++ ID AVG L +G Q+ +++LF E + + HP I Sbjct: 132 QVSIDTVSASREELLTGLASGEIDLAVGFLPGLGKQVHEKRLFQEKFVYIARRDHPGIDG 191 Query: 182 SLSLEQYVAAKHVVVSPFTGHH--LVEDVMSEMGIKPIVALRVPHFTSLLAVVATTDLML 239 L Q A HVV SP H VE V++ ++ +VA+RV F S+ +VA +DL+ Sbjct: 192 RLQASQLRALPHVVGSPHGTQHAAAVEKVLTGPRVRAVVAMRVGSFLSIGPIVADSDLVA 251 Query: 240 TLPSRIAKSFARDGSMRSLPPPIPIPSFDVNLYWY 274 +PS +A + ++ + PP+ PSF+V++ W+ Sbjct: 252 VVPSNLAALVSEHVGLQLIAPPVRFPSFEVSMVWH 286