BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1067.p (225 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1534 [TK] COG0745 Response regulators consisting of a CheY-li... 234 8e-62 PA5360 [TK] COG0745 Response regulators consisting of a CheY-lik... 233 3e-61 VC0719 [TK] COG0745 Response regulators consisting of a CheY-lik... 220 2e-57 STM0397 [TK] COG0745 Response regulators consisting of a CheY-li... 218 8e-57 YPO3205 [TK] COG0745 Response regulators consisting of a CheY-li... 215 8e-56 >RSc1534 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Rso Ralstonia solanacearum Length = 237 Score = 234 bits (598), Expect = 8e-62, Method: Compositional matrix adjust. Identities = 119/230 (51%), Positives = 160/230 (69%), Gaps = 8/230 (3%) Query: 2 TTILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGL 61 ++IL+VEDEP+IAELIA L+ AG NA A + P LVLLDWMLP +SG+ Sbjct: 3 SSILVVEDEPAIAELIAVNLQHAGHYPIRAYNAEQALSLMSDVLPDLVLLDWMLPGKSGV 62 Query: 62 HLLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRR 121 +RA+ + +Q+ +IMLTA+S E+DKI GLD GADDY+TKPFSP+EL ARIKA+LRR Sbjct: 63 MFAKELRANERTRQIPIIMLTARSEEQDKIMGLDAGADDYVTKPFSPKELLARIKAVLRR 122 Query: 122 KSPEHAQEVMSAGPITLDPASCSV------SLDGARIDIGHAEYKLLKFFLAHPDRVFSR 175 ++P+ +V++ + LDPA+ V S + ++D+G E++LL F + HP+RV SR Sbjct: 123 RAPQLTDDVVAINGLRLDPATHRVTAVNSESENPIKLDLGPTEFRLLHFLMTHPERVHSR 182 Query: 176 SQLLDRVWGDHVVIEERTVDVHVLRLRKALRDA--ECLIKTVRSVGYMLS 223 SQLLD+VWGDHV +EERTVDVH+ RLR AL +I+TVR GY L+ Sbjct: 183 SQLLDQVWGDHVFVEERTVDVHIKRLRAALAPGGYSSMIETVRGSGYRLA 232 >PA5360 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Pae Pseudomonas aeruginosa Length = 229 Score = 233 bits (593), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/224 (51%), Positives = 152/224 (67%), Gaps = 1/224 (0%) Query: 3 TILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLH 62 TILIV+DE I E+IA L+ AG+ N A + R P L+LLDWMLP SG+ Sbjct: 5 TILIVDDEAPIREMIAVALEMAGYECLEAENTQQAHAVIVDRKPDLILLDWMLPGTSGIE 64 Query: 63 LLSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRK 122 L R++ D + +IMLTAK E++KI GL+ GADDYITKPFSPREL AR+KA+LRR Sbjct: 65 LARRLKRDELTVDIPIIMLTAKGEEDNKIQGLEVGADDYITKPFSPRELVARLKAVLRRT 124 Query: 123 SPEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRV 182 P ++ + G + LDP S V++DG ++G EY+LL+FF+ H +R ++R QLLD+V Sbjct: 125 GPGDSEAPIEVGGLLLDPISHRVTIDGKPAEMGPTEYRLLQFFMTHQERAYTRGQLLDQV 184 Query: 183 WGDHVVIEERTVDVHVLRLRKALRDA-ECLIKTVRSVGYMLSTK 225 WG +V +EERTVDVH+ RLRKAL + E L++TVR GY STK Sbjct: 185 WGGNVYVEERTVDVHIRRLRKALGEVYENLVQTVRGTGYRFSTK 228 >VC0719 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Vch Vibrio cholerae Length = 229 Score = 220 bits (561), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 107/224 (47%), Positives = 154/224 (68%), Gaps = 2/224 (0%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL+VEDE I E++ F L++ G+ + + +A + P LVLLDWMLP SG++L Sbjct: 5 ILVVEDEAPIREMLCFVLEQKGYQAVEAEDYDSAMSKLAEPFPDLVLLDWMLPGGSGINL 64 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 + ++ + + + V+MLTA+ EEDK+ GL+ GADDYITKPFSP+EL AR+KA++RR + Sbjct: 65 IKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPFSPKELVARLKAVIRRVT 124 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 P ++V+ + LDP S V+ + +D+G E+K+L FF+ H +RV+SR QLL+ VW Sbjct: 125 PTALEDVIDVQGLKLDPVSHRVTANDQPLDMGPTEFKMLHFFMTHQERVYSREQLLNNVW 184 Query: 184 GDHVVIEERTVDVHVLRLRKALRDA--ECLIKTVRSVGYMLSTK 225 G +V +E+RTVDVH+ RLRKAL DA + LI+TVR GY STK Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEDAGHDKLIQTVRGAGYRFSTK 228 >STM0397 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Sty Salmonella typhimurium LT2 Length = 229 Score = 218 bits (555), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 152/224 (67%), Gaps = 2/224 (0%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL+VEDE I E++ F L++ G+ + +A + + P L+LLDWMLP SGL Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNKLNEPWPDLILLDWMLPGGSGLQF 64 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 + ++ + + + V+MLTA+ EED++ GL+ GADDYITKPFSP+EL ARIKA++RR S Sbjct: 65 IKHLKREAMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 P +EV+ ++LDP S V + +D+G E+KLL FF+ HP+RV+SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPGSHRVMTGDSPLDMGPTEFKLLHFFMTHPERVYSREQLLNHVW 184 Query: 184 GDHVVIEERTVDVHVLRLRKALRDA--ECLIKTVRSVGYMLSTK 225 G +V +E+RTVDVH+ RLRKAL + + +++TVR GY ST+ Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALEHSGHDRMVQTVRGTGYRFSTR 228 >YPO3205 [TK] COG0745 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain Ype Yersinia pestis Length = 229 Score = 215 bits (547), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 105/224 (46%), Positives = 151/224 (67%), Gaps = 2/224 (0%) Query: 4 ILIVEDEPSIAELIAFTLKEAGWSSFVVSNAAAAWDFVQHRAPQLVLLDWMLPDRSGLHL 63 IL+VEDE I E++ F L++ G+ + +A + P LVLLDWMLP SG+ Sbjct: 5 ILVVEDEAPIREMVCFVLEQNGYQPLEAEDYDSAVARLSEPFPDLVLLDWMLPGGSGIQF 64 Query: 64 LSRIRADRQLQQLSVIMLTAKSMEEDKIAGLDNGADDYITKPFSPRELTARIKALLRRKS 123 + ++ + + + V+MLTA+ EED++ GL+ GADDYITKPFSP+EL ARIKA++RR S Sbjct: 65 IKHMKREALTRDIPVMMLTARGEEEDRVRGLEVGADDYITKPFSPKELVARIKAVMRRIS 124 Query: 124 PEHAQEVMSAGPITLDPASCSVSLDGARIDIGHAEYKLLKFFLAHPDRVFSRSQLLDRVW 183 P +EV+ ++LDP+S V + +D+G E+KLL FF+ HP+RV+SR QLL+ VW Sbjct: 125 PMAVEEVIEMQGLSLDPSSHRVMANDQALDMGPTEFKLLHFFMTHPERVYSREQLLNYVW 184 Query: 184 GDHVVIEERTVDVHVLRLRKALR--DAECLIKTVRSVGYMLSTK 225 G +V +E+RTVDVH+ RLRKAL + +++TVR GY ST+ Sbjct: 185 GTNVYVEDRTVDVHIRRLRKALETDGHDKMVQTVRGTGYRFSTR 228