BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1066.p (235 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc1533 [P] COG0704 Phosphate uptake regulator Rso Ralstonia sol... 213 2e-55 VC0727 [P] COG0704 Phosphate uptake regulator Vch Vibrio cholerae 213 4e-55 STM3853 [P] COG0704 Phosphate uptake regulator Sty Salmonella ty... 200 3e-51 YPO4113 [P] COG0704 Phosphate uptake regulator Ype Yersinia pestis 198 1e-50 phoU [P] COG0704 Phosphate uptake regulator Eco Escherichia coli... 196 3e-50 >RSc1533 [P] COG0704 Phosphate uptake regulator Rso Ralstonia solanacearum Length = 235 Score = 213 bits (543), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 110/223 (49%), Positives = 149/223 (66%) Query: 1 MTGDHSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRL 60 M+ H S Q+D DL I +KVL MGG+VE Q A+ A N + ++ +V + VN L Sbjct: 1 MSDKHLSTQFDTDLTSISTKVLQMGGLVEAQIARAMRALANFDAELCDQVRAVELEVNAL 60 Query: 61 EVELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAIHLHKRGIGLV 120 E+E+D C+++I RRQPTA DLR VMA K IT+LERVGDEA KIA+ + + + Sbjct: 61 EIEIDSDCNNIIARRQPTARDLRLVMAISKTITNLERVGDEAEKIAKRTKRILQDPLAHS 120 Query: 121 SHYETVSLIAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMED 180 +Y V E A LR ALDAFARLD A ++++D+ +D FR R LIT+MME+ Sbjct: 121 LNYADVKRSGEMAATILRHALDAFARLDTTAAVSILQEDKALDEEFRGFMRELITYMMEN 180 Query: 181 ARTISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRHS 223 RTIS ++D L++AKAIERIGDHAKNIAE+++Y+V G D+RH+ Sbjct: 181 PRTISVALDLLFIAKAIERIGDHAKNIAEFIIYIVKGTDVRHA 223 >VC0727 [P] COG0704 Phosphate uptake regulator Vch Vibrio cholerae Length = 236 Score = 213 bits (541), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 107/222 (48%), Positives = 146/222 (65%), Gaps = 6/222 (2%) Query: 3 GDHSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRLEV 62 G H S Q++ +LE IRS+VL MGG+VE Q A+ A + +A RV+ DD VN +EV Sbjct: 4 GRHISGQFNVELESIRSQVLTMGGLVEQQLTLAMQALHEDDEKLARRVIADDHKVNAMEV 63 Query: 63 ELDDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAIHLHKRGIGLVSH 122 +D+AC+ +I +RQPTA DLR +MA IK ITDLER+GD ATK+A AI H Sbjct: 64 SIDEACTRIIAKRQPTAKDLRLIMAIIKTITDLERIGDSATKMAYIAIERPPAK----QH 119 Query: 123 YETVSL--IAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMED 180 VSL + QA+ L LDAFAR+D + AAE+ KQD+R+D + ++ R L+T+MMED Sbjct: 120 QFQVSLEPLCRQAIAMLHQVLDAFARMDVEAAAEIYKQDDRLDKEYEAVVRQLMTYMMED 179 Query: 181 ARTISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRH 222 + I + +W A+AIER+GD +NI EY++Y V GKD+RH Sbjct: 180 PKNIPHILQVIWSARAIERVGDRCQNICEYIIYFVKGKDVRH 221 >STM3853 [P] COG0704 Phosphate uptake regulator Sty Salmonella typhimurium LT2 Length = 241 Score = 200 bits (508), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 99/219 (45%), Positives = 144/219 (65%), Gaps = 4/219 (1%) Query: 5 HSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRLEVEL 64 H S Q++ +LE IR++V+ MGGMVE Q DAI A N + ++A RV++ D VN +EV + Sbjct: 9 HISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMHNQDSELAKRVVEGDHQVNMMEVAI 68 Query: 65 DDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAIH-LHKRGIGLVSHY 123 D+AC +I +RQPTA+DLR VMA IK I +LER+GD A KI RTA+ ++ L+ Sbjct: 69 DEACVRIIAKRQPTASDLRLVMAIIKTIAELERIGDVADKICRTALEKFSQQHQPLLVSL 128 Query: 124 ETVSLIAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMEDART 183 E+ + + L LDAFAR+D +A + ++D+++D + I R L+T+MMED+RT Sbjct: 129 ES---LGRHTVQMLHDVLDAFARMDLDEAVRIYREDKKVDQEYEGIVRQLMTYMMEDSRT 185 Query: 184 ISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRH 222 I + L+ A++IERIGD +NI EY+ Y V G+D RH Sbjct: 186 IPSVLTALFCARSIERIGDRCQNICEYIFYFVKGQDFRH 224 >YPO4113 [P] COG0704 Phosphate uptake regulator Ype Yersinia pestis Length = 240 Score = 198 bits (503), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/222 (45%), Positives = 143/222 (64%), Gaps = 10/222 (4%) Query: 5 HSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRLEVEL 64 H S Q++ +LE IR++VL MGG+VE Q DAI A N + ++A RV+ DE VN +EV + Sbjct: 9 HISGQFNAELEHIRTQVLTMGGLVEQQLSDAITAMHNQDGELAKRVIDGDEKVNMMEVAI 68 Query: 65 DDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAI----HLHKRGIGLV 120 D+AC +I +RQPTA+DLR VMA IK I++LER+GD A KI RTA+ H H+ L+ Sbjct: 69 DEACVRIIAKRQPTASDLRLVMAIIKTISELERIGDVADKICRTALEKFSHQHQ---SLL 125 Query: 121 SHYETVSLIAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMED 180 E+ + + L LDAFAR+D +A + ++D ++D + I R L+T+MMED Sbjct: 126 VSLES---LGRHTVQMLHDVLDAFARMDLDEAIRIYREDRKVDQEYEGIVRQLMTYMMED 182 Query: 181 ARTISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRH 222 RTI + L+ A++IERIGD +NI E++ Y V G D RH Sbjct: 183 PRTIPSVLTALFCARSIERIGDRCQNICEFIFYFVKGHDFRH 224 >phoU [P] COG0704 Phosphate uptake regulator Eco Escherichia coli K12 Length = 241 Score = 196 bits (499), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 97/219 (44%), Positives = 143/219 (65%), Gaps = 4/219 (1%) Query: 5 HSSKQYDQDLEQIRSKVLAMGGMVEHQFQDAIAAFRNGNLDVAHRVMKDDEAVNRLEVEL 64 H S Q++ +LE IR++V+ MGGMVE Q DAI A N + D+A RV++ D+ VN +EV + Sbjct: 9 HISGQFNAELESIRTQVMTMGGMVEQQLSDAITAMHNQDSDLAKRVIEGDKNVNMMEVAI 68 Query: 65 DDACSHLIVRRQPTANDLRTVMATIKIITDLERVGDEATKIARTAIH-LHKRGIGLVSHY 123 D+AC +I +RQPTA+DLR VM K I +LER+GD A KI RTA+ ++ L+ Sbjct: 69 DEACVRIIAKRQPTASDLRLVMVISKTIAELERIGDVADKICRTALEKFSQQHQPLLVSL 128 Query: 124 ETVSLIAEQAMDQLRSALDAFARLDDQQAAELIKQDERIDHGFRSITRSLITFMMEDART 183 E+ + + L LDAFAR+D +A + ++D+++D + I R L+T+MMED+RT Sbjct: 129 ES---LGRHTIQMLHDVLDAFARMDIDEAVRIYREDKKVDQEYEGIVRQLMTYMMEDSRT 185 Query: 184 ISGSIDTLWVAKAIERIGDHAKNIAEYVVYVVGGKDIRH 222 I + L+ A++IERIGD +NI E++ Y V G+D RH Sbjct: 186 IPSVLTALFCARSIERIGDRCQNICEFIFYYVKGQDFRH 224