BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1039.p (203 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA1397 [TK] COG2197 Response regulator containing a CheY-like re... 121 1e-27 VC2702 [TK] COG2197 Response regulator containing a CheY-like re... 120 2e-27 SMc02248 [TK] COG2197 Response regulator containing a CheY-like ... 116 3e-26 lin2659 [TK] COG2197 Response regulator containing a CheY-like r... 115 5e-26 mlr5684 [TK] COG2197 Response regulator containing a CheY-like r... 110 1e-24 >PA1397 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Pae Pseudomonas aeruginosa Length = 210 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 74/198 (37%), Positives = 114/198 (57%), Gaps = 5/198 (2%) Query: 5 RLLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMR-AEDAQAPDMVLLDIQLGGLN 63 R+++ DDH LFR G+ +LQ LP+A I EAG L +R A++ + PD ++LD++ GL Sbjct: 4 RIIVADDHPLFREGMLSILQRLLPEARIEEAGDLAGVLRLADEGEQPDSLILDLRFPGLT 63 Query: 64 GIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVAGG 123 I+ +A L R++P +I++S D + GA F+ K+ E + Q +L + G Sbjct: 64 RIEMLADLRRRFPRTTLIVVSMVDDPQLIGEVMNAGADGFLGKSIAPEELGQAILAIRAG 123 Query: 124 RHTL-PTPSGQVEASAKPQF---TPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQA 179 + PSG + P+ T RQ +VL LL+QG +NK IGR L++S T+R HV + Sbjct: 124 EVLVRYEPSGLLPLQPSPRLEGLTERQLDVLRLLAQGKSNKEIGRALDISHYTVRIHVSS 183 Query: 180 ILAALEVDNRAEAAFAAR 197 +L AL+V +R AA R Sbjct: 184 LLRALDVPSRTAAAVKYR 201 >VC2702 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Vch Vibrio cholerae Length = 209 Score = 120 bits (302), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 69/194 (35%), Positives = 106/194 (54%), Gaps = 7/194 (3%) Query: 6 LLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMRAEDAQA-PDMVLLDIQLGGLNG 64 ++I DDH LFR L + A+ A + EA SL+ + + ++ PD++LLD+++ G NG Sbjct: 7 IIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESEPDLLLLDLKMPGANG 66 Query: 65 IDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVAGGR 124 + G+ L ++PD+PI+++SA + V GA F+ K++ ++ L +V G Sbjct: 67 MSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAALNQVLNGE 126 Query: 125 HTLPTP------SGQVEASAKPQFTPRQYEVLGLLSQGLTNKAIGRRLNLSENTIRGHVQ 178 P G A TP+QY+VLG+LS GL NK I LN+SE TI+ H+ Sbjct: 127 PYFPAHLLVDGFVGNDLAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKAHMT 186 Query: 179 AILAALEVDNRAEA 192 AI L V NR +A Sbjct: 187 AIFRKLGVKNRTQA 200 >SMc02248 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Sme Sinorhizobium meliloti Length = 215 Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 77/214 (35%), Positives = 113/214 (52%), Gaps = 12/214 (5%) Query: 1 MPISRLLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMRAE-DAQAPDMVLLDIQL 59 MP ++I DDH LFR +R L I EAG A RA D D++LLD+ + Sbjct: 1 MPEMTIIIADDHPLFRGAMRQALSGMAGAPAIVEAGDFAAARRAAADNPDADLMLLDLTM 60 Query: 60 GGLNGIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLE 119 G++G+ G+ L ++P +P++I+SA D T+ A GAA F+SK+A E I + + + Sbjct: 61 PGVSGLSGLIALRAEFPSLPVMIVSAHDDPATIHRALDLGAAGFLSKSAGIEEIREGIAK 120 Query: 120 VAGGRHTLPTPSGQVEASAKPQ----------FTPRQYEVLGLLSQGLTNKAIGRRLNLS 169 V G +P P +P+ TP+Q VL +L++GL NK I L +S Sbjct: 121 VMAGEVFVP-PGYDQNQEYEPEVADLLHRLQTLTPQQSRVLSMLAEGLLNKQIAYELGVS 179 Query: 170 ENTIRGHVQAILAALEVDNRAEAAFAARRRGLVS 203 E TI+ HV AIL L VD+R +A + G V+ Sbjct: 180 EATIKAHVSAILLKLNVDSRTQAVIQLSKLGTVA 213 >lin2659 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Lin Listeria innocua Length = 228 Score = 115 bits (289), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 67/222 (30%), Positives = 117/222 (52%), Gaps = 24/222 (10%) Query: 5 RLLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDAMRAEDAQAPDMVLLDIQLGGLNG 64 +++I+DDH LFR G++ +L+ ++EA + ++ + PD+VL+DI + +NG Sbjct: 4 KIMIVDDHQLFREGIKRILELEDSFEVVAEAENGKNIVAKVREYKPDIVLMDINMPTVNG 63 Query: 65 IDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVAGG- 123 +D +L R++P + +I+L+ DTD V A + GA ++ K A +++ + V G Sbjct: 64 LDATEMLVRQFPSIKVIVLTIHDTDEYVTEALRAGAVGYLLKEMDAHELVEAVKIVDNGG 123 Query: 124 ---------------RHTLPTPSGQ-VEASAKPQ-------FTPRQYEVLGLLSQGLTNK 160 RH T + Q V +P+ T R+ EVL LL+ G +N+ Sbjct: 124 AYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKMPLHILTHRECEVLQLLTDGKSNR 183 Query: 161 AIGRRLNLSENTIRGHVQAILAALEVDNRAEAAFAARRRGLV 202 IG L +SE T++ HV +IL ++V++R +A A + G V Sbjct: 184 GIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVTAIKHGWV 225 >mlr5684 [TK] COG2197 Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain Mlo Mesorhizobium loti Length = 219 Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/210 (37%), Positives = 108/210 (51%), Gaps = 20/210 (9%) Query: 6 LLIIDDHALFRCGLRLVLQAALPQATISEAGSLEDA----MRAEDAQAPDMVLLDIQLGG 61 +I DDH LFR LR L A I EAG E A + ED D+VLLD+ + G Sbjct: 7 FVIADDHPLFRGALREALAGIGNVAAIHEAGDFESAKALVVANEDV---DLVLLDLSMPG 63 Query: 62 LNGIDGMAVLARKWPDVPIIILSADDTDGTVRAATQRGAAAFVSKAATAEHILQVLLEVA 121 +G+ G+ L P VP+I++SA D T+R A GA+ F+SK+A+ E I + V Sbjct: 64 ASGLSGLISLRGIHPAVPLIVVSAHDDPATIRRALDLGASGFISKSASMEEIRNAVQLVL 123 Query: 122 GGRHTLPTPSG-QVEASAKPQ----------FTPRQYEVLGLLSQGLTNKAIGRRLNLSE 170 G + P G + P+ TP+Q VLG+L++GL NK I L +SE Sbjct: 124 AG--DIAAPVGVDLGVERDPEISDLIKRLQALTPQQTRVLGMLAEGLLNKQIAYELGVSE 181 Query: 171 NTIRGHVQAILAALEVDNRAEAAFAARRRG 200 TI+ HV AIL L VD+R +A + G Sbjct: 182 ATIKAHVSAILQKLGVDSRTQAVILLSKIG 211