BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1032.p         (159 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0728 [K] COG1327 Predicted transcriptional regulator, consist...   210   1e-54
VC2272 [K] COG1327 Predicted transcriptional regulator, consists...   177   9e-45
ybaD [K] COG1327 Predicted transcriptional regulator, consists o...   162   2e-40
ZybaD [K] COG1327 Predicted transcriptional regulator, consists ...   162   2e-40
ECs0466 [K] COG1327 Predicted transcriptional regulator, consist...   162   2e-40

>RSc0728 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Rso Ralstonia
           solanacearum
          Length = 149

 Score =  210 bits (534), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 121/146 (82%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTE 60
           MKCPFC H  T V+DTR+SE+G ++RRRRRC +CD+RFTTYERIEL  P +VKKNGSR +
Sbjct: 1   MKCPFCGHAATQVIDTRMSEEGDTVRRRRRCESCDRRFTTYERIELFFPAVVKKNGSRVD 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDVAVQSIQDKLLQSGEREVMSGHVGELVMHELKRLD 120
           +D  K++ S+ LALRKRPVSAEA+D A+  I++KLL  GE+E+ S  +GELVM ELKRLD
Sbjct: 61  YDRNKVKDSMRLALRKRPVSAEAIDEAIARIEEKLLSHGEKEIGSDRIGELVMRELKRLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDAIDE 146
           KI YIRFASVY+SFEDV+EF+D +DE
Sbjct: 121 KIGYIRFASVYRSFEDVSEFRDMLDE 146


>VC2272 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Vch Vibrio cholerae
          Length = 156

 Score =  177 bits (449), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 83/144 (57%), Positives = 108/144 (75%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTE 60
           M CPFC+  DT V+D+RL  DGH +RRRR+C  C++RFTT+E  EL MP ++K NG+R  
Sbjct: 8   MHCPFCSENDTKVIDSRLVADGHQVRRRRQCLACNERFTTFETAELVMPRVIKSNGNREP 67

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDVAVQSIQDKLLQSGEREVMSGHVGELVMHELKRLD 120
           FD  K+ G L  AL KRPVSA+A+++A+ +I+ KL  +GEREV S  +G LVM +LK LD
Sbjct: 68  FDEEKMIGGLQRALEKRPVSADAIELAISTIKSKLRATGEREVPSKLIGNLVMEQLKVLD 127

Query: 121 KIAYIRFASVYKSFEDVTEFQDAI 144
           K+AYIRFASVY+SFEDV EF + I
Sbjct: 128 KVAYIRFASVYRSFEDVREFGEEI 151


>ybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Eco Escherichia coli K12
          Length = 149

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 105/144 (72%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTE 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL MP +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDVAVQSIQDKLLQSGEREVMSGHVGELVMHELKRLD 120
           F+  KLR  ++ AL KRPVS++ V++A+  I+ +L  +GEREV S  +G LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDAI 144
           K+AYIRFASVY+SFED+ EF + I
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEI 144


>ZybaD [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains EcZ Escherichia coli
           O157:H7 EDL933
          Length = 149

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 105/144 (72%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTE 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL MP +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDVAVQSIQDKLLQSGEREVMSGHVGELVMHELKRLD 120
           F+  KLR  ++ AL KRPVS++ V++A+  I+ +L  +GEREV S  +G LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDAI 144
           K+AYIRFASVY+SFED+ EF + I
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEI 144


>ECs0466 [K] COG1327 Predicted transcriptional regulator, consists of a
           Zn-ribbon and ATP-cone domains Ecs Escherichia coli
           O157:H7
          Length = 149

 Score =  162 bits (411), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 78/144 (54%), Positives = 105/144 (72%)

Query: 1   MKCPFCNHEDTPVLDTRLSEDGHSIRRRRRCGNCDKRFTTYERIELTMPVIVKKNGSRTE 60
           M CPFC   DT V+D+RL  +G S+RRRR+C  C++RFTT+E  EL MP +VK N  R  
Sbjct: 1   MHCPFCFAVDTKVIDSRLVGEGSSVRRRRQCLVCNERFTTFEVAELVMPRVVKSNDVREP 60

Query: 61  FDPAKLRGSLMLALRKRPVSAEAVDVAVQSIQDKLLQSGEREVMSGHVGELVMHELKRLD 120
           F+  KLR  ++ AL KRPVS++ V++A+  I+ +L  +GEREV S  +G LVM +LK+LD
Sbjct: 61  FNEEKLRSGMLRALEKRPVSSDDVEMAINHIKSQLRATGEREVPSKMIGNLVMEQLKKLD 120

Query: 121 KIAYIRFASVYKSFEDVTEFQDAI 144
           K+AYIRFASVY+SFED+ EF + I
Sbjct: 121 KVAYIRFASVYRSFEDIKEFGEEI 144