BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1029.p         (150 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0731 [R] COG0824 Predicted thioesterase Rso Ralstonia solanac...   171   7e-43
VC1840 [R] COG0824 Predicted thioesterase Vch Vibrio cholerae         121   7e-28
PA0968 [R] COG0824 Predicted thioesterase Pae Pseudomonas aerugi...   115   3e-26
ybgC [R] COG0824 Predicted thioesterase Eco Escherichia coli K12      113   2e-25
ZybgC [R] COG0824 Predicted thioesterase EcZ Escherichia coli O1...   113   2e-25

>RSc0731 [R] COG0824 Predicted thioesterase Rso Ralstonia solanacearum
          Length = 134

 Score =  171 bits (432), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 88/142 (61%), Positives = 104/142 (73%), Gaps = 12/142 (8%)

Query: 6   SPFDWNIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQHLAETTGAIFVVKNT 65
           S FDWN+RVY+EDTD GGVVFYANYLKFFERARTEWLR+ G  QQ LA+TTGAIFVV++T
Sbjct: 2   SSFDWNLRVYWEDTDAGGVVFYANYLKFFERARTEWLRALGVDQQALADTTGAIFVVRST 61

Query: 66  SVDYLAPARLDDELRLTVVVEKFRNASMQFIQEAWRLPSGDGGTACDGEPRLLARGSITV 125
           +VDY APARLDD L++   +E+   AS+QF QE+WR   GD          LL  G+I V
Sbjct: 62  AVDYRAPARLDDLLQVRSRMERVGPASVQFAQESWR---GD---------ILLVSGTIRV 109

Query: 126 VCVDQATFRPRPIPDEVLTCIK 147
            CVD+ TFRP PIP  +L  IK
Sbjct: 110 GCVDRLTFRPTPIPAPILATIK 131


>VC1840 [R] COG0824 Predicted thioesterase Vch Vibrio cholerae
          Length = 155

 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 59/134 (44%), Positives = 81/134 (60%), Gaps = 12/134 (8%)

Query: 6   SPFDWNIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQHLAETTGAIFVVKNT 65
           + F W + VYYEDTD GGVV++ANYLKFFERARTE LR+ G  QQ L E  G  FVV++ 
Sbjct: 22  NTFHWPVTVYYEDTDAGGVVYHANYLKFFERARTEMLRAVGVHQQSLLE-QGIGFVVRHM 80

Query: 66  SVDYLAPARLDDELRLTVVVEKFRNASMQFIQEAWRLPSGDGGTACDGEPRLLARGSITV 125
            +D+L  A+LDD L +   V + + AS+ F QE             + E  +L++  + V
Sbjct: 81  EIDFLKGAKLDDHLEVVTRVSELKKASLTFCQE-----------LVNPEGTVLSKAKVKV 129

Query: 126 VCVDQATFRPRPIP 139
            C+D  + RPR +P
Sbjct: 130 ACIDNESMRPRALP 143


>PA0968 [R] COG0824 Predicted thioesterase Pae Pseudomonas aeruginosa
          Length = 148

 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 61/134 (45%), Positives = 76/134 (56%), Gaps = 11/134 (8%)

Query: 7   PFDWNIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQHLAETTGAIFVVKNTS 66
           PF    RVYYEDTD GG+V+Y NYLKF ERARTE LR+ GF Q  L      +FVV +  
Sbjct: 9   PFQQRFRVYYEDTDAGGIVYYVNYLKFMERARTERLRALGFAQSQLV-GDNLLFVVHSAE 67

Query: 67  VDYLAPARLDDELRLTVVVEKFRNASMQFIQEAWRLPSGDGGTACDGEPRLLARGSITVV 126
             Y APA+LDDEL ++  VE+   AS++F Q+  R            +  LL  G   V 
Sbjct: 68  ARYHAPAKLDDELLVSAEVEELNRASLKFRQQVRRA----------SDSVLLCEGRFLVA 117

Query: 127 CVDQATFRPRPIPD 140
           CV   T +PR IP+
Sbjct: 118 CVRADTLKPRAIPE 131


>ybgC [R] COG0824 Predicted thioesterase Eco Escherichia coli K12
          Length = 134

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 80/144 (55%), Gaps = 12/144 (8%)

Query: 5   SSPFDWNIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQHLAETTGAIFVVKN 64
           ++ F W +RVYYEDTD GGVV++A+Y+ F+ERARTE LR   F QQ L     A FVV+ 
Sbjct: 3   TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-FVVRK 61

Query: 65  TSVDYLAPARLDDELRLTVVVEKFRNASMQFIQEAWRLPSGDGGTACDGEPRLLARGSIT 124
            +V+Y APARLDD L +   +   R  S+ F Q              + E  LL    + 
Sbjct: 62  MTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQR-----------IVNAENTLLNEAEVL 110

Query: 125 VVCVDQATFRPRPIPDEVLTCIKK 148
           VVCVD    +PR +P  ++   K+
Sbjct: 111 VVCVDPLKMKPRALPKSIVAEFKQ 134


>ZybgC [R] COG0824 Predicted thioesterase EcZ Escherichia coli O157:H7
           EDL933
          Length = 134

 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 59/144 (40%), Positives = 80/144 (55%), Gaps = 12/144 (8%)

Query: 5   SSPFDWNIRVYYEDTDTGGVVFYANYLKFFERARTEWLRSFGFQQQHLAETTGAIFVVKN 64
           ++ F W +RVYYEDTD GGVV++A+Y+ F+ERARTE LR   F QQ L     A FVV+ 
Sbjct: 3   TTLFRWPVRVYYEDTDAGGVVYHASYVAFYERARTEMLRHHHFSQQALMAERVA-FVVRK 61

Query: 65  TSVDYLAPARLDDELRLTVVVEKFRNASMQFIQEAWRLPSGDGGTACDGEPRLLARGSIT 124
            +V+Y APARLDD L +   +   R  S+ F Q              + E  LL    + 
Sbjct: 62  MTVEYYAPARLDDMLEIQTEITSMRGTSLVFTQR-----------IVNAENTLLNEAEVL 110

Query: 125 VVCVDQATFRPRPIPDEVLTCIKK 148
           VVCVD    +PR +P  ++   K+
Sbjct: 111 VVCVDPLKMKPRALPKSIVAEFKQ 134