BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1028.p (234 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0732 [U] COG0811 Biopolymer transport proteins Rso Ralstonia ... 314 8e-86 PA0969 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas... 241 7e-64 VC1839 [U] COG0811 Biopolymer transport proteins Vch Vibrio chol... 226 5e-59 YPO1121 [U] COG0811 Biopolymer transport proteins Ype Yersinia p... 218 6e-57 STM0745 [U] COG0811 Biopolymer transport proteins Sty Salmonella... 208 6e-54 >RSc0732 [U] COG0811 Biopolymer transport proteins Rso Ralstonia solanacearum Length = 230 Score = 314 bits (805), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 166/234 (70%), Positives = 193/234 (82%), Gaps = 7/234 (2%) Query: 1 MNVTQDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFW 60 + VTQDLS +SL+ +AS+LVQ VM LLL S+ SWTYIFRK F +R+AR QTE FER FW Sbjct: 4 VEVTQDLSIVSLVLHASLLVQFVMGLLLVMSLFSWTYIFRKAFALRAARAQTESFERDFW 63 Query: 61 SGGNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGA 120 +GG+L A+YQ A +NR G ALERIF+AGM E+ K + + G DP +LD A Sbjct: 64 AGGDLQAMYQSAANNRHHTG----ALERIFEAGMREYLKTREQ---QRGVGDPSAILDAA 116 Query: 121 RRAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVA 180 RRAMRAAYQREMD+LESHL FLASVGSVSPY+GLFGTVWGIMNAFRGL+NVQQATL+AVA Sbjct: 117 RRAMRAAYQREMDSLESHLPFLASVGSVSPYIGLFGTVWGIMNAFRGLSNVQQATLSAVA 176 Query: 181 PGIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQAR 234 PGIAEAL+ATAIGLFAAIPAV+AYNRY+ ++DRLA RFESF+EEFSNILQRQ R Sbjct: 177 PGIAEALVATAIGLFAAIPAVIAYNRYATEMDRLANRFESFMEEFSNILQRQTR 230 >PA0969 [U] COG0811 Biopolymer transport proteins Pae Pseudomonas aeruginosa Length = 231 Score = 241 bits (616), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 130/231 (56%), Positives = 164/231 (70%), Gaps = 9/231 (3%) Query: 2 NVTQDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFWS 61 NV S SLI+NAS++VQLVML L++ASVTSW IF++ +R+A+ + FE FWS Sbjct: 4 NVVDHTSMWSLISNASIVVQLVMLTLVAASVTSWIMIFQRGNAMRAAKKALDAFEERFWS 63 Query: 62 GGNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGAR 121 G +LS LY+ A SN G +E+IF+AG EF++ + + VDP +++G Sbjct: 64 GIDLSKLYRQAGSNPDPDSG----VEQIFRAGFKEFSRLR-----QQPGVDPDAVMEGVA 114 Query: 122 RAMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAP 181 RAMR A RE + LE+ L FLA+VGS SPYVGLFGTVWGIMN+FRGLA VQQATLA VAP Sbjct: 115 RAMRVAISREEEKLEASLPFLATVGSTSPYVGLFGTVWGIMNSFRGLATVQQATLATVAP 174 Query: 182 GIAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQ 232 GIAEALIATAIGLFAAIPAV+AYNR+S + L R+ +F +EF IL R+ Sbjct: 175 GIAEALIATAIGLFAAIPAVIAYNRFSARSEMLIGRYYTFADEFQAILHRK 225 >VC1839 [U] COG0811 Biopolymer transport proteins Vch Vibrio cholerae Length = 227 Score = 226 bits (575), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 123/230 (53%), Positives = 156/230 (67%), Gaps = 9/230 (3%) Query: 3 VTQDLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFWSG 62 +T D+SF+ L AS LV++VML LL SV SW I ++ I +A + + FE FWSG Sbjct: 1 MTADISFLDLFLQASFLVKMVMLTLLGMSVASWAAIIKRSKVISAAEREADTFEDRFWSG 60 Query: 63 GNLSALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGARR 122 +L ALYQD +RK G +E IF AG EF + + + GA P +++G R Sbjct: 61 MDLGALYQDV--KKRKDDIYG--IEEIFYAGFTEFARLRKT---NPGA--PDFVMEGTGR 111 Query: 123 AMRAAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPG 182 AMR A RE+D+LE+ L FLA+VGS+SPY+GLFGTVWGIM+AF L V+QATLA VAPG Sbjct: 112 AMRVAVAREVDSLETSLPFLATVGSISPYIGLFGTVWGIMHAFIALGEVKQATLAMVAPG 171 Query: 183 IAEALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQ 232 IAEALIATAIGLFAAIPAV+AYNR S+ + +L + +F EEF IL RQ Sbjct: 172 IAEALIATAIGLFAAIPAVMAYNRLSNKVSKLEHTYATFSEEFHTILHRQ 221 >YPO1121 [U] COG0811 Biopolymer transport proteins Ype Yersinia pestis Length = 228 Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 112/228 (49%), Positives = 153/228 (67%), Gaps = 9/228 (3%) Query: 6 DLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFWSGGNL 65 D++ + L AS+ V+L+ML+L+ S+ SW I ++ + +A E FE FWSG L Sbjct: 3 DMNILDLFLQASLFVKLIMLVLMGFSIASWAIIIQRTRILNAATRDAEAFEDKFWSGIEL 62 Query: 66 SALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGARRAMR 125 S LYQ++ + R G E+IF +G EF + R + P ++DGA RAMR Sbjct: 63 SRLYQESQARRDTLSGS----EQIFHSGFKEFARLH-----RANSHAPEAVIDGASRAMR 113 Query: 126 AAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAE 185 + RE++ALE+H+ FL +VGS+SPY+GLFGTVWGIM+AF L V+QATL VAPGIAE Sbjct: 114 ISMNRELEALETHIPFLGTVGSISPYIGLFGTVWGIMHAFISLGAVKQATLQMVAPGIAE 173 Query: 186 ALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQA 233 ALIATAIGLFAAIPAV+AYNR + +++L +++F+EEF IL RQA Sbjct: 174 ALIATAIGLFAAIPAVMAYNRLNQHVNKLEQNYDNFMEEFIAILHRQA 221 >STM0745 [U] COG0811 Biopolymer transport proteins Sty Salmonella typhimurium LT2 Length = 230 Score = 208 bits (530), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 111/228 (48%), Positives = 155/228 (67%), Gaps = 9/228 (3%) Query: 6 DLSFISLIANASVLVQLVMLLLLSASVTSWTYIFRKMFTIRSARVQTEEFERVFWSGGNL 65 D++ + L AS+LV+L+ML+L+ S+ SW I ++ + +A + E FE FWSG L Sbjct: 3 DMNILDLFLKASLLVKLIMLILIGFSIASWAIIIQRTRILNAAAREAEAFEDKFWSGIEL 62 Query: 66 SALYQDALSNRRKAGGEGGALERIFQAGMGEFTKAKASVAARGGAVDPGLLLDGARRAMR 125 S LYQ++ R G E+IF +G EF + R + P +++GA RAMR Sbjct: 63 SRLYQESQGRRDSLSGS----EQIFYSGFKEFVRLH-----RANSHAPEAVVEGASRAMR 113 Query: 126 AAYQREMDALESHLAFLASVGSVSPYVGLFGTVWGIMNAFRGLANVQQATLAAVAPGIAE 185 + RE++ LE+H+ FL +VGS+SPY+GLFGTVWGIM+AF L V+QATL VAPGIAE Sbjct: 114 ISMNRELETLETHIPFLGTVGSISPYIGLFGTVWGIMHAFIALGAVKQATLQMVAPGIAE 173 Query: 186 ALIATAIGLFAAIPAVVAYNRYSHDIDRLAIRFESFIEEFSNILQRQA 233 ALIATAIGLFAAIPAV+AYNR + +++L + +++F+EEF+ IL RQA Sbjct: 174 ALIATAIGLFAAIPAVMAYNRLNQRVNKLELNYDNFMEEFTAILHRQA 221