BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.1025.p (430 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer ... 480 e-135 XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer t... 328 1e-89 PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer t... 317 4e-86 YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer ... 289 7e-78 VC1836 [U] COG0823 Periplasmic component of the Tol biopolymer t... 281 2e-75 >RSc0735 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Rso Ralstonia solanacearum Length = 432 Score = 480 bits (1236), Expect = e-135, Method: Compositional matrix adjust. Identities = 239/407 (58%), Positives = 302/407 (74%), Gaps = 5/407 (1%) Query: 28 SQAQIRFEITGVGASQIPVAITAFPGEESAPQQISPVVKADLARSGIFKLID-NGDALSD 86 ++AQ+ EI G G+SQ P+AI F GE PQ I+ +V+ADL SG F +D G + D Sbjct: 27 ARAQLYVEIAGAGSSQYPIAIANFQGESQIPQDITAIVRADLVHSGRFSNVDVAGAVVPD 86 Query: 87 SSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSTQLSALSISAQPQLLRLT 146 S A + W+ RGA A G+VTR D R+++R+RL+DT + L L+++ LRL Sbjct: 87 SPAPDLGAWKSRGAAAFVGGTVTRNGD-RYEIRFRLYDTAKGESLGGLALTRGEGQLRLA 145 Query: 147 AHKIADDIYQKLTGIPGIFSTRISYVTKSGNEYRLEVADADGEGTQVALRSNEPIISPAW 206 AH+IAD IYQKL G G+F+TR+SYV+K G Y+L+++D+DG QVAL SNEPIISPAW Sbjct: 146 AHEIADYIYQKLIGDRGVFATRLSYVSKVGRRYQLQISDSDGANPQVALTSNEPIISPAW 205 Query: 207 SPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGL 266 SPDGTKVAYVSFE +KPVVY+ +L++ +R++++N KG+NSAPAWSPDG R+AVAL+RDG Sbjct: 206 SPDGTKVAYVSFESRKPVVYVHDLISGRRAVISNQKGNNSAPAWSPDGRRVAVALSRDGN 265 Query: 267 TQVYLINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQIYKV---GLDGGTP 323 TQ+Y +NADGSGLRRLT S+ IDTEP FSPDG SIYFTSDR G PQIY++ G D G+ Sbjct: 266 TQIYQVNADGSGLRRLTRSSAIDTEPSFSPDGRSIYFTSDRGGAPQIYRMPTEGEDAGSA 325 Query: 324 QRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIRLSDGSRDQSPSFAP 383 QRVTF G YN SPR+SPDGK LA+ISR G F+LY DL+NG L+D S D+SPSFA Sbjct: 326 QRVTFKGGYNTSPRVSPDGKLLAYISRVGGAFKLYVQDLSNGDVTGLTDTSYDESPSFAA 385 Query: 384 NGKYIMYATESGRRGSLAVVSTDGRIKQRLTTQAGDIREPTWGPFMK 430 NGK+I+YAT G R LA VSTDGR +Q L+ QAG +REP WGPFM+ Sbjct: 386 NGKFILYATRVGGRSVLAAVSTDGRTRQILSLQAGTVREPAWGPFMQ 432 >XF1897 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Xfa Xylella fastidiosa 9a5c Length = 430 Score = 328 bits (841), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 180/425 (42%), Positives = 257/425 (60%), Gaps = 15/425 (3%) Query: 19 VAGLSF---APASQAQIRFEITGVGASQIPVAITAFPGEES--AP-QQISPVVKADLARS 72 + GL F A Q + +I G + P+A+ P +S AP +S VV ADL RS Sbjct: 2 LVGLLFPLSALTQQQGLTIDIVGGNTAATPIAVLPMPYHDSVGAPATDVSSVVAADLNRS 61 Query: 73 GIFKLIDNGDAL---SDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQST 129 G F+ + G + + S I + WQ + + VG V G + V Y LFD Sbjct: 62 GQFRTLPLGQIIERPTHGSEIRFPTWQALKQDYIVVGRVLDARQGTYRVEYELFDVRNGK 121 Query: 130 QLSALSISAQPQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGNE----YRLEVAD 185 ++ L+++A+ +R AH++AD IY+K+TG+ G F TRI+YVT SG+ Y L VAD Sbjct: 122 RMLGLAMTARASAMRDVAHQMADAIYEKITGLRGAFFTRIAYVTASGSHGAMRYALMVAD 181 Query: 186 ADGEGTQVALRSNEPIISPAWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSN 245 +DG Q +RS EP++SP WSPDG K+AYVSFE +YIQ++ T R +V++F+G N Sbjct: 182 SDGYNPQTIVRSAEPLLSPDWSPDGKKLAYVSFEKGGSSIYIQDIATGSRELVSSFRGIN 241 Query: 246 SAPAWSPDGSRLAVALTRDGLTQVYLINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTS 305 +AP+++PDG R+A++L+R G ++Y+++ L +LTNS GIDTEP +S DG IYFTS Sbjct: 242 AAPSFAPDGHRIALSLSRSGNPEIYVMDLVSKQLIQLTNSFGIDTEPAWSSDGKFIYFTS 301 Query: 306 DRSGGPQIYKVGLDGGTPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNG 365 DR G PQIYKV GGT RVTF G+YN + +S D K + ++++ +D ++G Sbjct: 302 DRGGRPQIYKVASVGGTATRVTFQGNYNATTSVSYDDKKIVVAQGSGNVYRIAMMDQSSG 361 Query: 366 QEI--RLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSTDGRIKQRLTTQAGDIREP 423 + LS GS D+SPSFAPN ++YA G RG L VS D R++QRL + D+REP Sbjct: 362 STVWNTLSTGSLDESPSFAPNASMVLYAAREGGRGVLYAVSADARVRQRLVSVDSDVREP 421 Query: 424 TWGPF 428 WGP+ Sbjct: 422 AWGPY 426 >PA0972 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Pae Pseudomonas aeruginosa Length = 432 Score = 317 bits (811), Expect = 4e-86, Method: Compositional matrix adjust. Identities = 170/399 (42%), Positives = 245/399 (61%), Gaps = 13/399 (3%) Query: 44 IPVAIT--AFPGEESAPQQISPVVKADLARSGIFKLIDNGDALSD---SSAINYADWQKR 98 IP+A+ F G P+ +S ++ DL SG F+ + + +S +S + + DW+ Sbjct: 35 IPIAVVPFGFQGGNVLPEDMSNIIGNDLRNSGYFEPLPRQNMISQPAQASEVIFRDWKAV 94 Query: 99 GANALAVGSVTRLADGRFDVRYRLFDTVQSTQLSALSISAQPQLLRLTAHKIADDIYQKL 158 G N + VG++ A GR V+Y LFD Q+ S++ LR +H IAD ++KL Sbjct: 95 GVNYVMVGNIVP-AGGRLQVQYALFDVGTEQQVLTGSVTGSTDQLRDMSHYIADQSFEKL 153 Query: 159 TGIPGIFSTRISYVTKS-----GNEYRLEVADADGEGTQVALRSNEPIISPAWSPDGTKV 213 TGI G FST++ YVT Y L+ +D DG L+S EPI+SP +SPDG ++ Sbjct: 154 TGIKGAFSTKMLYVTAERFSVDNTRYTLQRSDYDGARPVTLLQSREPIVSPRFSPDGRRI 213 Query: 214 AYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYLIN 273 AYVSFE K+P ++IQ + T +R + NF+G N APA+SPDG+RLA L+RDG ++Y+++ Sbjct: 214 AYVSFEQKRPRIFIQYVDTGRREQITNFEGLNGAPAFSPDGNRLAFVLSRDGNPEIYVMD 273 Query: 274 ADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSGGPQIYKVGLDGGTPQRVTFNGSYN 333 LRRLTN+ IDTEP + DG ++YFTSDR G PQIYK+ ++ G RVTF G+YN Sbjct: 274 LGSRALRRLTNNLAIDTEPFWGKDGSTLYFTSDRGGKPQIYKMNVNSGAVDRVTFIGNYN 333 Query: 334 ISPRISPDGKTLAFISRRDGL--FQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYA 391 +P++S D KTL + R+ G FQ+ A DL G LS+ + D SP+ APNG ++YA Sbjct: 334 ANPKLSADEKTLVMVHRQQGYTNFQIAAQDLQRGNLRVLSNTTLDDSPTVAPNGTMLIYA 393 Query: 392 TESGRRGSLAVVSTDGRIKQRLTTQAGDIREPTWGPFMK 430 T RG L +VS +GR++ L T GD+REP+W P++ Sbjct: 394 TRQQDRGVLMLVSINGRVRIPLPTAQGDVREPSWSPYLN 432 >YPO1124 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Ype Yersinia pestis Length = 430 Score = 289 bits (740), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 167/420 (39%), Positives = 241/420 (57%), Gaps = 18/420 (4%) Query: 24 FAPASQAQIRFEITGVGASQIPVAITAFP--GEESAPQQISPVVKADLARSGIFKLIDNG 81 +A A++R EIT S P+ + F G + P++I +V ADL SG F ID Sbjct: 15 WASVLHAEVRIEITQGVDSARPIGVVPFKWMGPGTPPEEIGAIVGADLRNSGKFNPIDAA 74 Query: 82 ---DALSDSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTVQSTQLSALSISA 138 S ++ + A W G +A+ VG V ADG + V Y+L DT SA SI A Sbjct: 75 RMPQQPSTAAEVTPAAWTALGIDAVVVGQVQPSADGSYVVSYQLVDT----SGSAGSILA 130 Query: 139 Q------PQLLRLTAHKIADDIYQKLTGIPGIFSTRISYVTKSGN---EYRLEVADADGE 189 Q Q LR +AH ++D++++KLTGI G F TRI+YV K+ + L V+D DG Sbjct: 131 QNQYKVTKQWLRYSAHTVSDEVFEKLTGIKGAFRTRIAYVVKTNGGKFPHELRVSDYDGY 190 Query: 190 GTQVALRSNEPIISPAWSPDGTKVAYVSFEMKKPVVYIQNLVTRQRSIVANFKGSNSAPA 249 V RS EP++SPAWSPDG+K+AYV+FE K + IQ L VA+F N APA Sbjct: 191 NQFVVHRSPEPLMSPAWSPDGSKIAYVTFESGKSALVIQTLANGAIRQVASFPRHNGAPA 250 Query: 250 WSPDGSRLAVALTRDGLTQVYLINADGSGLRRLTNSAGIDTEPQFSPDGGSIYFTSDRSG 309 +SPDG++LA AL++ G +Y+++ + ++T+ +TEP + PD ++ +TSD+ G Sbjct: 251 FSPDGTKLAFALSKSGSLNLYVMDLASGQISQVTDGRSNNTEPSWFPDSQNLAYTSDQGG 310 Query: 310 GPQIYKVGLDGGTPQRVTFNGSYNISPRISPDGKTLAFISRRDGLFQLYALDLTNGQEIR 369 PQ+YKV ++GG PQR+T+ GS N + +SPDGK L +S G + DL G Sbjct: 311 RPQVYKVNINGGVPQRITWEGSQNQNADVSPDGKFLVLVSSNGGAQHIAKQDLETGAVQV 370 Query: 370 LSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSTDGRIKQRLTTQAGDIREPTWGPFM 429 L+D D++PS APNG ++Y++ G L +VSTDGR K RL G ++ P W P++ Sbjct: 371 LTDTLLDETPSIAPNGTMVIYSSTQGLGSVLQLVSTDGRFKARLPATDGQVKFPAWSPYL 430 >VC1836 [U] COG0823 Periplasmic component of the Tol biopolymer transport system Vch Vibrio cholerae Length = 450 Score = 281 bits (719), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 163/442 (36%), Positives = 242/442 (54%), Gaps = 29/442 (6%) Query: 17 VAVAGLSFAPASQAQIRFEITGVGASQIPVAITAF--PGEESAPQQISPVVKADLARSGI 74 + + G F+ + A + IT S P+AI F G P+ +S V+ +DL RSG Sbjct: 9 LMLIGTGFSNIANAALELVITDGIDSARPIAIVPFKWEGATKLPEDVSAVIASDLQRSGK 68 Query: 75 FKLIDNGDALS---DSSAINYADWQKRGANALAVGSVTRLADGRFDVRYRLFDTV--QST 129 F + +N+ W G ++L G++T+ A+G + + Y+L D V Q T Sbjct: 69 FSPVPTSKMPQTPYSEEQVNFGKWTSMGVDSLLTGTITQNAEGSYVISYQLVDIVRGQLT 128 Query: 130 QLSALSISAQPQL-------------------LRLTAHKIADDIYQKLTGIPGIFSTRIS 170 Q + ++S QL +R AH+IAD +Y++LTG G F TRI+ Sbjct: 129 QGQSKALSQDGQLVLSKDHVLFNKVATVPASRMREYAHRIADLVYEELTGERGAFLTRIA 188 Query: 171 YVT---KSGNEYRLEVADADGEGTQVALRSNEPIISPAWSPDGTKVAYVSFEMKKPVVYI 227 YV K Y+L +AD DG ++ LRS +P++SPAWSPDG +AYVSF+ + +Y+ Sbjct: 189 YVVVNDKDPYPYQLRIADYDGYNERLVLRSKQPLMSPAWSPDGQTLAYVSFQNGQAEIYM 248 Query: 228 QNLVTRQRSIVANFKGSNSAPAWSPDGSRLAVALTRDGLTQVYLINADGSGLRRLTNSAG 287 N+ + +R + +F N AP +SPDG LA+ L++ G QVY ++ L +T+ Sbjct: 249 MNIYSGKREKLTSFPRHNGAPRFSPDGKTLALVLSKTGNLQVYTMDLATRRLTEVTSGRS 308 Query: 288 IDTEPQFSPDGGSIYFTSDRSGGPQIYKVGLDGGTPQRVTFNGSYNISPRISPDGKTLAF 347 +TEP + PDG S+ FTSDR G PQIY+V L GG +R+T+ GS N+ +I+PDGK L Sbjct: 309 NNTEPFWHPDGKSLIFTSDRGGKPQIYQVNLSGGETKRLTWQGSQNLGGQITPDGKFLVM 368 Query: 348 ISRRDGLFQLYALDLTNGQEIRLSDGSRDQSPSFAPNGKYIMYATESGRRGSLAVVSTDG 407 ++R D F L DL G L+ D+SPS APNG ++Y++ + L++VS DG Sbjct: 369 VNRSDSGFNLAKQDLETGAMQILTKTLLDESPSIAPNGGMVIYSSIYNKANVLSMVSIDG 428 Query: 408 RIKQRLTTQAGDIREPTWGPFM 429 R K RL G +R P W PF+ Sbjct: 429 RFKARLPATNGRVRAPAWSPFL 450