BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1024.p         (174 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc0736 [M] COG2885 Outer membrane protein and related peptidogl...   182   3e-46
PA0973 [M] COG2885 Outer membrane protein and related peptidogly...   122   3e-28
PM0966 [M] COG2885 Outer membrane protein and related peptidogly...   120   2e-27
VC1835 [M] COG2885 Outer membrane protein and related peptidogly...   118   8e-27
HI0381 [M] COG2885 Outer membrane protein and related peptidogly...   116   2e-26

>RSc0736 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Rso Ralstonia
           solanacearum
          Length = 172

 Score =  182 bits (462), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/153 (63%), Positives = 117/153 (76%), Gaps = 3/153 (1%)

Query: 22  CSS-TKLDDKANAPVQTGASNGADTRAVNTVNAGSVDPLNDPQGVLAKRSVYFDYDSYTV 80
           CSS  KLDD +      GA+ GADTR V  V+  S D L DP   LAKRSVYFD+DSYTV
Sbjct: 22  CSSGVKLDDTSKN-ATGGAAAGADTRNVTPVDV-SRDELTDPNSPLAKRSVYFDFDSYTV 79

Query: 81  KPEYRTVIENHAKYLVAHKDRKVVIQGNTDDRGGAEYNLALGQKRAEAVRKALILLGVSD 140
           KPEY+ ++  HA+YL +H  RKV+IQGNTD+RG +EYNLALGQKRAEAVR+AL  LGV D
Sbjct: 80  KPEYQGLLTQHARYLQSHNQRKVLIQGNTDERGTSEYNLALGQKRAEAVRRALSSLGVPD 139

Query: 141 AQVEAVSFGKEKPKALGQDEASYAENRRADIAY 173
           +Q+E+VS GKEKP+A G DE S+A+NRR+DI Y
Sbjct: 140 SQMESVSLGKEKPQASGHDEESWAQNRRSDIVY 172


>PA0973 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pae Pseudomonas
           aeruginosa
          Length = 168

 Score =  122 bits (307), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/172 (41%), Positives = 103/172 (59%), Gaps = 7/172 (4%)

Query: 1   MRTRTISTFALIVSSAVLLAACSSTKLDDKANAPVQTGASNGADTRAVNTVNAGSVD-PL 59
           M       FA +  +  +   CSS     K       GA+ G D  A    N+G+VD  L
Sbjct: 1   MEMLKFGKFAALALAMAVAVGCSS-----KGGDASGEGANGGVDPNAGYGANSGAVDGSL 55

Query: 60  NDPQGVLAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVVIQGNTDDRGGAEYNL 119
           +D   + A  + YF+YDS  +KPE    ++ HAK L     R VV++G+TD+RG  EYN+
Sbjct: 56  SDEAALRAITTFYFEYDSSDLKPEAMRALDVHAKDLKGSGQR-VVLEGHTDERGTREYNM 114

Query: 120 ALGQKRAEAVRKALILLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADI 171
           ALG++RA+AV++ L+L GVS AQ+E VS+GKE+P A G DE S+A+NRR ++
Sbjct: 115 ALGERRAKAVQRYLVLQGVSPAQLELVSYGKERPVATGHDEQSWAQNRRVEL 166


>PM0966 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Pmu Pasteurella
           multocida
          Length = 150

 Score =  120 bits (300), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 95/170 (55%), Gaps = 21/170 (12%)

Query: 4   RTISTFALIVSSAVLLAACSSTKLDDKANAPVQTGASNGADTRAVNTVNAGSVDPLNDPQ 63
           + ++   L+  S  +LAAC S+K D+ A                       SV  L    
Sbjct: 2   KKLTKVLLVAGSVAVLAACGSSKKDESAG----------------QMFGGYSVQDLQQRY 45

Query: 64  GVLAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVVIQGNTDDRGGAEYNLALGQ 123
                 +VYF +D Y ++ EY  +++ HA +L A    KVV++GNTD+RG  EYN+ALGQ
Sbjct: 46  -----NTVYFGFDKYNIEGEYVQILDAHAAFLNATPATKVVVEGNTDERGTPEYNIALGQ 100

Query: 124 KRAEAVRKALILLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 173
           +RA+AV+  L   GV   QV  VS+G+EKP  LG DEA+Y++NRRA +AY
Sbjct: 101 RRADAVKHYLSAKGVQAGQVSTVSYGEEKPAVLGHDEAAYSKNRRAVLAY 150


>VC1835 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Vch Vibrio
           cholerae
          Length = 172

 Score =  118 bits (295), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 67/175 (38%), Positives = 103/175 (58%), Gaps = 5/175 (2%)

Query: 1   MRTRTISTFALIVSSAVLLAACSSTKLDDKANAPVQTGAS--NGADTRAVNTVNAGSVDP 58
           M+   +    LI    + + ACSS+  DD AN+  QT  S  +  D+  +N     +   
Sbjct: 1   MQLNKVLKSLLIALPVLAVTACSSS--DDAANSGSQTNQSAVSTVDSNGLNAQGQLTEQE 58

Query: 59  LNDPQGVLAKRSVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVVIQGNTDDRGGAEYN 118
           L + Q +   +++YF +D+ T+  +Y  ++  HA YLV +   +V I+G+ D+RG  EYN
Sbjct: 59  LKE-QALRENQTIYFAFDNATIASDYEAMLAAHAAYLVKNPSLRVTIEGHADERGTPEYN 117

Query: 119 LALGQKRAEAVRKALILLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 173
           +ALG++RA+AV K L  LGV   Q+  VS+G+EKP  LGQ E +YA+NRRA + Y
Sbjct: 118 IALGERRAQAVAKYLEALGVQAGQLSIVSYGEEKPLVLGQSEEAYAKNRRAVLVY 172


>HI0381 [M] COG2885 Outer membrane protein and related
           peptidoglycan-associated (lipo)proteins Hin Haemophilus
           influenzae
          Length = 153

 Score =  116 bits (291), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 69/166 (41%), Positives = 95/166 (57%), Gaps = 24/166 (14%)

Query: 11  LIVSSAVLLAACSSTKLDDKANAPVQT-GASNGADTRAVNTVNAGSVDPLNDPQGVLAKR 69
           L+  S   LAACSS+  D   N   QT G  + AD                     L +R
Sbjct: 9   LVAGSVAALAACSSSNNDAAGNGAAQTFGGYSVAD---------------------LQQR 47

Query: 70  --SVYFDYDSYTVKPEYRTVIENHAKYLVAHKDRKVVIQGNTDDRGGAEYNLALGQKRAE 127
             +VYF +D Y +  EY  +++ HA YL A    KV+++GNTD+RG  EYN+ALGQ+RA+
Sbjct: 48  YNTVYFGFDKYDITGEYVQILDAHAAYLNATPAAKVLVEGNTDERGTPEYNIALGQRRAD 107

Query: 128 AVRKALILLGVSDAQVEAVSFGKEKPKALGQDEASYAENRRADIAY 173
           AV+  L   GV   ++  VS+G+EKP  LG DEA+Y++NRRA +AY
Sbjct: 108 AVKGYLAGKGVDAGKLGTVSYGEEKPAVLGHDEAAYSKNRRAVLAY 153