BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.1007.p         (52 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

msl3831 Non COG                                                        47   8e-06
SMc04189 Non COG                                                       39   0.004
PA3231 Non COG                                                         37   0.008

>msl3831 Non COG
          Length = 52

 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 46/52 (88%)

Query: 1  MTLGTILLIVLILILLGVIPAWPHSRNWGYGPSGIAGTIVIILLILLLLGKI 52
          M + T++++VLIL+L+G +PAWPHSR+WGYGPSGI G  ++++L+LLL+G++
Sbjct: 1  MPISTLVIVVLILVLVGAVPAWPHSRSWGYGPSGIVGVALVVVLVLLLMGRL 52


>SMc04189 Non COG
          Length = 51

 Score = 38.5 bits (88), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/50 (68%), Positives = 44/50 (88%)

Query: 3  LGTILLIVLILILLGVIPAWPHSRNWGYGPSGIAGTIVIILLILLLLGKI 52
          LGT+LLI+LIL+L+G  PAWP+S  WGYGPSGI G +V++LLILLL+G+I
Sbjct: 2  LGTVLLIILILLLIGAFPAWPYSSGWGYGPSGILGVLVVVLLILLLMGRI 51


>PA3231 Non COG
          Length = 52

 Score = 37.4 bits (85), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/33 (69%), Positives = 29/33 (87%)

Query: 20 PAWPHSRNWGYGPSGIAGTIVIILLILLLLGKI 52
          P +PHSRNWGYGPSGI G ++++LL+LLLLG I
Sbjct: 20 PVFPHSRNWGYGPSGIIGALLVVLLVLLLLGMI 52