BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0998.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

lin2677 [C] COG0711 F0F1-type ATP synthase, subunit b Lin Lister...    27   8.3  
aq_387 [R] COG1353 Predicted hydrolase of the HD superfamily (pe...    27   9.0  

>lin2677 [C] COG0711 F0F1-type ATP synthase, subunit b Lin Listeria innocua
          Length = 170

 Score = 27.3 bits (59), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 22/82 (26%), Positives = 46/82 (56%), Gaps = 16/82 (19%)

Query: 33  ADKSKADADYKAAKKKCSPMKGNDKDVCEKQAKADHESAIADAKA----KRKGV--EADK 86
           A++S+A A+   A++K             +QA+ + ++ I +AK     +R+ +   A +
Sbjct: 57  AEESRAQAEQLLAEQKS----------VLQQARVESQTMIENAKQLGEKEREEIVKTARR 106

Query: 87  DAQKDKNDANYDVAKEKCDAMS 108
           ++++ K +A  D+A+EK DA+S
Sbjct: 107 ESERIKEEAKADIAREKEDAIS 128


>aq_387 [R] COG1353 Predicted hydrolase of the HD superfamily (permuted
           catalytic motifs) Aae Aquifex aeolicus
          Length = 621

 Score = 27.3 bits (59), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)

Query: 31  YKADKSKADADYKAAKKKCSPMKGNDKDVCEKQAKADHESAIADAKAKRKGVEADKDAQK 90
           Y ADK K     KA  K  S  K      CE Q + D E  + + K   + ++  K  Q+
Sbjct: 99  YIADKIKIPESVKATFK--SHNKHYFTYFCEIQEEVDREEWMTELKVNEETLKKFKINQE 156

Query: 91  DKNDANYDVAKEKCDA 106
           +     YD+ + K  A
Sbjct: 157 NPYGFTYDLLERKLGA 172