BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0994.p         (87 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ECs4774_2 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Ecs Escher...    29   3.0  
XF1844 [P] COG0004 Ammonia permease Xfa Xylella fastidiosa 9a5c        28   4.0  
Rv0987 [V] COG0577 ABC-type antimicrobial peptide transport syst...    28   4.5  
MT1015 [V] COG0577 ABC-type antimicrobial peptide transport syst...    28   4.6  
YLR336c Non COG                                                        28   6.7  

>ECs4774_2 [I] COG1250 3-hydroxyacyl-CoA dehydrogenase Ecs Escherichia coli
           O157:H7
          Length = 420

 Score = 28.9 bits (63), Expect = 3.0,   Method: Composition-based stats.
 Identities = 12/54 (22%), Positives = 29/54 (53%)

Query: 16  RYKAQQGVGILHLTGQARGKTSVQDAQASSNETPEIASGRPRTTEEEIMDKLVL 69
           R+  + G+G  H    ++GK   ++  A  +   E++  +   +EEEI+ ++++
Sbjct: 271 RFGQKNGLGFWHYKEDSKGKPKKEEDAAVDDLLAEVSQPKRDFSEEEIIARMMI 324


>XF1844 [P] COG0004 Ammonia permease Xfa Xylella fastidiosa 9a5c
          Length = 492

 Score = 28.5 bits (62), Expect = 4.0,   Method: Composition-based stats.
 Identities = 13/39 (33%), Positives = 23/39 (58%)

Query: 45  SNETPEIASGRPRTTEEEIMDKLVLGWLLGVPLLMLIVL 83
           S   P  A+  P+TT   ++DK  + W+L   LL+L+++
Sbjct: 65  SEAAPSDAAAIPKTTPTPVVDKGDVAWMLTSTLLVLLMV 103


>Rv0987 [V] COG0577 ABC-type antimicrobial peptide transport system,
          permease component Mtu Mycobacterium tuberculosis H37Rv
          Length = 855

 Score = 28.1 bits (61), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 4  LALCPTWQSGWRRYKAQQGVGILHLTGQARGKTSVQDAQASSNE 47
          +A  P W++ WRR + +    IL + G A G   +     SSN 
Sbjct: 7  VAYAPLWRTAWRRLRQRPFQYILLVLGIALGVAMIVAIDVSSNS 50


>MT1015 [V] COG0577 ABC-type antimicrobial peptide transport system,
          permease component MtC Mycobacterium tuberculosis
          CDC1551
          Length = 855

 Score = 28.1 bits (61), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 14/44 (31%), Positives = 21/44 (47%)

Query: 4  LALCPTWQSGWRRYKAQQGVGILHLTGQARGKTSVQDAQASSNE 47
          +A  P W++ WRR + +    IL + G A G   +     SSN 
Sbjct: 7  VAYAPLWRTAWRRLRQRPFQYILLVLGIALGVAMIVAIDVSSNS 50


>YLR336c Non COG
          Length = 899

 Score = 27.7 bits (60), Expect = 6.7,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 10/60 (16%)

Query: 18  KAQQGVGILHLTGQARGKTSVQDAQASSNE--------TPEIA--SGRPRTTEEEIMDKL 67
           K     G+ ++  QA GK  +   ++ SNE        T E+A  SG    + EE M KL
Sbjct: 80  KRSANAGVKNVGKQANGKNPISSDESESNENWDSDEVLTDEVAEESGEQAMSAEETMKKL 139