BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0992.p         (154 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA2169 Non COG                                                        148   5e-36
RSc2163 Non COG                                                       108   5e-24
alr0893 [R] COG0693 Putative intracellular protease/amidase Nos ...    32   0.74 
XF1060 Non COG                                                         31   0.98 
Cgl1741 [O] COG0542 ATPases with chaperone activity, ATP-binding...    30   1.7  

>PA2169 Non COG
          Length = 150

 Score =  148 bits (373), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 69/143 (48%), Positives = 102/143 (71%), Gaps = 2/143 (1%)

Query: 4   DHLISTLNDLIQISIDGEKGFRACAEDAQERYIPYKETFMTRATECAQTVLDLQNLVQRL 63
           D  +  LNDL+Q S DGE GF ACAED ++  +  K   + ++ +CA    +L+ +V  L
Sbjct: 7   DDTLDVLNDLLQTSKDGEAGFHACAEDLRDPQL--KAAMLEQSRDCAAAADELERIVLEL 64

Query: 64  GGEPANHSTLGGTLHRQWVNLKSAITGRDDESILEECERGEDAAVNAYRKALSEDLPSDI 123
           GG+P + ++  G LHR+WV+LKS +TG+D+E++L ECERGED A + Y+ AL + LP++I
Sbjct: 65  GGKPKDSTSFAGDLHRRWVDLKSLVTGKDEEAVLNECERGEDVAKHRYQAALEKSLPAEI 124

Query: 124 RLLIERQYQGVLANHDKVRSLRN 146
             +IERQYQGVL +HD+VR+LR+
Sbjct: 125 HQVIERQYQGVLRHHDRVRALRD 147


>RSc2163 Non COG
          Length = 150

 Score =  108 bits (270), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/145 (36%), Positives = 92/145 (63%), Gaps = 4/145 (2%)

Query: 2   TNDHLISTLNDLIQISIDGEKGFRACAEDAQERYIPYKETFMTRATE-CAQTVLDLQNLV 60
           T D ++  LN LI++   G+    +C+  A+E + P     +T A + C  +V +LQ LV
Sbjct: 4   TQDGIVLALNRLIEV---GKNDELSCSSGAREVHDPQLRDILTDAAQSCRASVQELQQLV 60

Query: 61  QRLGGEPANHSTLGGTLHRQWVNLKSAITGRDDESILEECERGEDAAVNAYRKALSEDLP 120
           + LGG+P +  ++ GTLHR W+ ++  IT  DD+ +LE CER ED A + Y+  L +DLP
Sbjct: 61  RSLGGQPRDRGSMNGTLHRGWMEIRHLITPNDDDVVLEMCEREEDIARHEYQTTLQQDLP 120

Query: 121 SDIRLLIERQYQGVLANHDKVRSLR 145
           ++IR +++RQY+G+  + +++ ++R
Sbjct: 121 AEIRAVVQRQYEGIQLHRERIHAMR 145


>alr0893 [R] COG0693 Putative intracellular protease/amidase Nos Nostoc sp.
           PCC 7120
          Length = 364

 Score = 31.6 bits (70), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 21/62 (33%)

Query: 32  QERYIPYKETFMTRATECAQTVLDLQNLVQRLGGEPANHSTLGGTLHRQWVNLKSAITGR 91
           ++R+I Y ET++TR                 LG +P    +LG  +  Q+  +K+A+TG 
Sbjct: 251 KQRHIEYLETYLTR-----------------LGEKP----SLGANIANQYAKVKTALTGS 289

Query: 92  DD 93
           DD
Sbjct: 290 DD 291


>XF1060 Non COG
          Length = 75

 Score = 31.2 bits (69), Expect = 0.98,   Method: Compositional matrix adjust.
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 5/50 (10%)

Query: 37 PYKETFMTRATECAQTVLDLQNLVQRLGGEPANHSTLGGTLHRQWVNLKS 86
          P  + F    T CAQ V  LQNL +R+G +  +H  +G      W N ++
Sbjct: 15 PNPKQFPVICTHCAQRVAVLQNLKERIGFKFGDHRHIG-----TWTNPQA 59


>Cgl1741 [O] COG0542 ATPases with chaperone activity, ATP-binding subunit
           Cgl Corynebacterium glutamicum
          Length = 595

 Score = 30.4 bits (67), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 29/111 (26%), Positives = 51/111 (45%), Gaps = 20/111 (18%)

Query: 40  ETFMTRATECAQTVLDLQNLV--QRLGGEPANHSTLGGTLHRQW-VNLKSAITGRDDESI 96
           E FM  + +  +++  L  +V   RL G+P +   LG  LH    V++   + G   +  
Sbjct: 230 ERFMPSSVQPRKSIRVLDAMVGWHRLSGKPMDMDLLGDVLHDAIGVDIAFKVDGTSIKDK 289

Query: 97  LEECERGEDAAVNAYRKALSEDLPSDIRLLIERQYQGVLAN-HDKVRSLRN 146
           L+E             K +++ L + +   + R+ Q V+A+ HDK R L N
Sbjct: 290 LDE-------------KVMAQSLATTV---VARRLQLVVADLHDKSRPLSN 324