BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0988.p (309 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2440 [E] COG0559 Branched-chain amino acid ABC-type transport... 410 e-114 AGc4402 [E] COG0559 Branched-chain amino acid ABC-type transport... 251 2e-66 mll3977 Non COG 248 1e-65 Cj1017c [E] COG0559 Branched-chain amino acid ABC-type transport... 245 1e-64 SMc01951 [E] COG0559 Branched-chain amino acid ABC-type transpor... 244 2e-64 >RSc2440 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Rso Ralstonia solanacearum Length = 311 Score = 410 bits (1054), Expect = e-114, Method: Compositional matrix adjust. Identities = 216/311 (69%), Positives = 261/311 (83%), Gaps = 2/311 (0%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 MDIFIQQI+NGLVLGS+YALIALGYTMVYG+L +INFAHGD+LM+GAM L+ + +Q+ Sbjct: 1 MDIFIQQIVNGLVLGSIYALIALGYTMVYGILGIINFAHGDVLMIGAMSALTAINFLQKF 60 Query: 61 APHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 P+LP + LV+A++ A+PVC VV+ IER+AYRPLRNAPRLAPLITAIGVSI+LQT AM Sbjct: 61 FPNLPDWLTLVLALLFAMPVCAVVAYTIERVAYRPLRNAPRLAPLITAIGVSIVLQTLAM 120 Query: 121 MIWGRSPLPFPQVMPSDPVHI--AGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMR 178 MIW R+PL FPQ++PS P+ I GA I+ +I +++++LA M GL L+V +TK+GRAMR Sbjct: 121 MIWSRNPLTFPQLLPSSPIDIGSTGATITGKEIAIILVSLAVMTGLTLLVNRTKLGRAMR 180 Query: 179 ATAENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSA 238 ATAEN R+AGLMGV+ N VI TF IGAA+AA+AGVM A NY A F MGF+PGLKAF+A Sbjct: 181 ATAENQRVAGLMGVNPNFVISATFMIGAAMAAVAGVMMATNYGNAHFYMGFIPGLKAFTA 240 Query: 239 AVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRPS 298 AVLGGIGN+ GAM+GG+LLGLIE+LGAGYIGDLTG GSNYQD+FAF+VLI VL RPS Sbjct: 241 AVLGGIGNLAGAMVGGVLLGLIEALGAGYIGDLTGGVFGSNYQDVFAFIVLICVLLFRPS 300 Query: 299 GIMGERVADRA 309 GIMGERVADRA Sbjct: 301 GIMGERVADRA 311 >AGc4402 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 300 Score = 251 bits (640), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 137/308 (44%), Positives = 201/308 (65%), Gaps = 9/308 (2%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 M+ FIQQ+INGL LGS+Y LIA+GYTMVYG++ +INFAHGDI M+G L + + Sbjct: 1 MEYFIQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLIATSF 60 Query: 61 APHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 +P + L++ ++ A+ + + + +IER+AYRPLR + RLAPLITAIG+SI L F Sbjct: 61 FAGIPVALLLLLMMIVAMLMTGLWNWVIERVAYRPLRGSFRLAPLITAIGMSIALSNFIQ 120 Query: 121 MIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 + G P P M ++ H +S Q++++++ + IV KT +GRA RAT Sbjct: 121 VTQGPRNKPIPS-MVTESYHFGAITVSLKQLIIMVVTSVLLFAFWYIVNKTPLGRAQRAT 179 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 ++ ++A L+GVD ++ I +TF +GAALAA+AG M+ Y A F+ GFVPG+KAF+AAV Sbjct: 180 EQDRKMAALLGVDVDKTISITFIMGAALAAVAGTMYLMYYGVASFSDGFVPGVKAFTAAV 239 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRPSGI 300 LGGIG++ GA+LGG+L+GLIESL + Y Y+D+ AF +L VL +P+GI Sbjct: 240 LGGIGSLPGAVLGGLLIGLIESLWSAY--------FSIAYKDVAAFGILAFVLIFKPTGI 291 Query: 301 MGERVADR 308 +G ++ Sbjct: 292 LGRPEVEK 299 >mll3977 Non COG Length = 300 Score = 248 bits (632), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 136/308 (44%), Positives = 203/308 (65%), Gaps = 9/308 (2%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 M F+QQ+INGL LGS+Y LIA+GYTMVYG++ +INFAHGDI MVGA L + ++ + Sbjct: 1 MQYFVQQLINGLTLGSIYGLIAIGYTMVYGIIGMINFAHGDIFMVGAFTALIVFLILGAL 60 Query: 61 APHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 +P ++ L++ ++ A+ + + + IE++AYRPLR + RLAPLITAIG+SI L F Sbjct: 61 FYSVPVVIALLVMMIVAMLLTSLYNWTIEKVAYRPLRGSFRLAPLITAIGMSIALSNFVQ 120 Query: 121 MIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 + G P P M S +I G +S QI+++I+ ++ +V +T +GRA RA Sbjct: 121 VTQGPRNKPIPP-MVSQVYNIDGVSVSLKQIIIVIVTALLLVVFWYLVNRTSLGRAQRAC 179 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 ++ ++A L+GVD +R I +TF +GA+LAA+AG ++ Y F+ GFVPG+KAF+AAV Sbjct: 180 EQDRKMAALLGVDVDRTISITFIMGASLAAVAGTLFLMYYGVVAFSDGFVPGVKAFTAAV 239 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRPSGI 300 LGGIG++ GA+LGG+L+G IES+ + Y +Y+D+ AF +L IVL PSGI Sbjct: 240 LGGIGSLPGAVLGGLLIGFIESMWSAY--------FSIDYKDVAAFSILAIVLIFLPSGI 291 Query: 301 MGERVADR 308 +G ++ Sbjct: 292 LGRPEVEK 299 >Cj1017c [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Cje Campylobacter jejuni Length = 298 Score = 245 bits (625), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 140/305 (45%), Positives = 202/305 (66%), Gaps = 18/305 (5%) Query: 1 MD--IFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQ 58 MD +F+QQ++NGL LGSMYALIA+GYTMVYGVL LINFAHGDI+MVGA L + + Sbjct: 1 MDSTLFLQQLVNGLSLGSMYALIAVGYTMVYGVLRLINFAHGDIMMVGAYAALFCMTNL- 59 Query: 59 QVAPHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTF 118 ++P + L +A++ A V I +RIAY+PLR APR++ LITAIG+S LQ Sbjct: 60 ----NVPFLGALSLAMIFAACVGIAT----DRIAYKPLRQAPRISLLITAIGISFFLQNL 111 Query: 119 AMMIWGRSPLPF-PQVMPSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAM 177 M++ +P F P + V+ G + + +M+ L +I ++ I+ K+K G A+ Sbjct: 112 FNMLFTSTPRTFTPPSYFEESVNFGGVITTYGSLMVPALTFVILIAVLWILYKSKYGIAI 171 Query: 178 RATAENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFS 237 RA A + + LMG+DANR+I + FA+G+ALAA+ GV WAANY + + MG + GLKAF+ Sbjct: 172 RALAFDIQTVNLMGIDANRIIAIVFALGSALAAVGGVFWAANYYSVEPTMGTLIGLKAFA 231 Query: 238 AAVLGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRP 297 AAVLGGIG++ GA+LGG+++G E + + DL+G ++D FAF+ L+ +L RP Sbjct: 232 AAVLGGIGSVVGAVLGGLIIGFTEVVVVAFFPDLSG------FKDAFAFIFLVFILLFRP 285 Query: 298 SGIMG 302 +GI+G Sbjct: 286 TGILG 290 >SMc01951 [E] COG0559 Branched-chain amino acid ABC-type transport system, permease components Sme Sinorhizobium meliloti Length = 300 Score = 244 bits (622), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/308 (44%), Positives = 200/308 (64%), Gaps = 9/308 (2%) Query: 1 MDIFIQQIINGLVLGSMYALIALGYTMVYGVLNLINFAHGDILMVGAMVGLSLLKVVQQV 60 M+ F+QQ++NGL LGS+Y +IA+GYTMVYG++ +INFAHGDI M+G L + ++ Sbjct: 1 MEYFVQQLVNGLTLGSIYGMIAIGYTMVYGIIGMINFAHGDIFMLGGFAALIVFLLLTTF 60 Query: 61 APHLPGIVQLVIAIVGAIPVCIVVSLLIERIAYRPLRNAPRLAPLITAIGVSILLQTFAM 120 +P ++ L+I +V + + + IER+AYRPLR + RLAPLITAIG+SI+L F Sbjct: 61 IAGVPVVLALLIMMVVGMLTAALWNWTIERVAYRPLRGSFRLAPLITAIGMSIVLSNFIQ 120 Query: 121 MIWGRSPLPFPQVMPSDPVHIAGALISPTQIMLLILALAAMIGLVLIVEKTKMGRAMRAT 180 + G P P ++ S + G +S QI+++++ + IV +T +GRA RAT Sbjct: 121 VTQGPRNKPIPPLV-SSVYDLFGISVSLKQIIIVVITAILLSVFWYIVNRTPLGRAQRAT 179 Query: 181 AENPRIAGLMGVDANRVIIVTFAIGAALAAIAGVMWAANYSTAQFAMGFVPGLKAFSAAV 240 ++ ++A L+GVD +R I VTF +GAALAA+AG M+ Y F GF PG+KAF+AAV Sbjct: 180 EQDRKMAALLGVDVDRTISVTFIMGAALAAVAGTMYLMYYGVVVFTDGFAPGVKAFTAAV 239 Query: 241 LGGIGNIYGAMLGGILLGLIESLGAGYIGDLTGNFLGSNYQDIFAFVVLIIVLTLRPSGI 300 LGGIG++ GA+LGG+L+GLIESL + Y +Y+D+ F +L IVL +PSGI Sbjct: 240 LGGIGSLPGAVLGGLLIGLIESLWSAY--------FTIDYKDVATFSILAIVLIFKPSGI 291 Query: 301 MGERVADR 308 +G ++ Sbjct: 292 LGRPEVEK 299