BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0984.p         (78 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSc2445 [J] COG0227 Ribosomal protein L28 Rso Ralstonia solanace...   142   2e-34
NMB0321 [J] COG0227 Ribosomal protein L28 Nme Neisseria meningit...   133   8e-32
NMA2166 [J] COG0227 Ribosomal protein L28 NmA Neisseria meningit...   133   8e-32
PA5316 [J] COG0227 Ribosomal protein L28 Pae Pseudomonas aeruginosa   123   1e-28
PM1151 [J] COG0227 Ribosomal protein L28 Pmu Pasteurella multocida    117   5e-27

>RSc2445 [J] COG0227 Ribosomal protein L28 Rso Ralstonia solanacearum
          Length = 77

 Score =  142 bits (357), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 69/76 (90%), Positives = 72/76 (94%)

Query: 1  MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVID 60
          MARVCQVTGK PMVGNNVSHANNKTKRRFLPNLQNRR +VESENRWVSLR+SNAGLR+ID
Sbjct: 1  MARVCQVTGKAPMVGNNVSHANNKTKRRFLPNLQNRRFWVESENRWVSLRVSNAGLRLID 60

Query: 61 KIGIDAVLADLRARGE 76
          K GID VLADLRARGE
Sbjct: 61 KKGIDEVLADLRARGE 76


>NMB0321 [J] COG0227 Ribosomal protein L28 Nme Neisseria meningitidis MC58
          Length = 77

 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 69/76 (90%)

Query: 1  MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVID 60
          MARVC+VTGK PM GNNVSHANNKTKRRFLPNLQ+RR +VESENRWV LR+SNA LR ID
Sbjct: 1  MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSNAALRTID 60

Query: 61 KIGIDAVLADLRARGE 76
          K+GID VLADLRARGE
Sbjct: 61 KVGIDVVLADLRARGE 76


>NMA2166 [J] COG0227 Ribosomal protein L28 NmA Neisseria meningitidis
          Z2491
          Length = 77

 Score =  133 bits (335), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 64/76 (84%), Positives = 69/76 (90%)

Query: 1  MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVID 60
          MARVC+VTGK PM GNNVSHANNKTKRRFLPNLQ+RR +VESENRWV LR+SNA LR ID
Sbjct: 1  MARVCKVTGKRPMSGNNVSHANNKTKRRFLPNLQSRRFWVESENRWVRLRVSNAALRTID 60

Query: 61 KIGIDAVLADLRARGE 76
          K+GID VLADLRARGE
Sbjct: 61 KVGIDVVLADLRARGE 76


>PA5316 [J] COG0227 Ribosomal protein L28 Pae Pseudomonas aeruginosa
          Length = 78

 Score =  123 bits (308), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 57/77 (74%), Positives = 69/77 (89%)

Query: 1  MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVID 60
          M+RVCQVTGKGP+ GNN+SHA+NKT+RRFLPNLQ+ R +VESE R+V LR+S  G+R+ID
Sbjct: 1  MSRVCQVTGKGPVTGNNISHAHNKTRRRFLPNLQHHRFWVESEKRFVRLRVSAKGMRIID 60

Query: 61 KIGIDAVLADLRARGEK 77
          K GI+AVLADLRARGEK
Sbjct: 61 KRGIEAVLADLRARGEK 77


>PM1151 [J] COG0227 Ribosomal protein L28 Pmu Pasteurella multocida
          Length = 78

 Score =  117 bits (294), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 65/78 (83%)

Query: 1  MARVCQVTGKGPMVGNNVSHANNKTKRRFLPNLQNRRIFVESENRWVSLRLSNAGLRVID 60
          M+RVCQVTGK P VGNN SHA N TKRRFLPNL   R +VESE R+V+LRL+  G+R+ID
Sbjct: 1  MSRVCQVTGKRPAVGNNRSHAMNATKRRFLPNLHTHRFWVESEKRFVTLRLTAKGMRIID 60

Query: 61 KIGIDAVLADLRARGEKV 78
          K GIDAVLAD+RARGEK+
Sbjct: 61 KKGIDAVLADIRARGEKI 78