BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0964.p         (307 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

RSp0396_1 [S] COG0586 Uncharacterized membrane-associated protei...   177   3e-44
PA1209_1 [S] COG0586 Uncharacterized membrane-associated protein...   140   4e-33
RSp0396_2 [P] COG0607 Rhodanese-related sulfurtransferase Rso Ra...   116   8e-26
PA1209_2 [P] COG0607 Rhodanese-related sulfurtransferase Pae Pse...    83   7e-16
NMB1689 [S] COG0586 Uncharacterized membrane-associated protein ...    67   4e-11

>RSp0396_1 [S] COG0586 Uncharacterized membrane-associated protein Rso
           Ralstonia solanacearum
          Length = 196

 Score =  177 bits (448), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 95/196 (48%), Positives = 135/196 (68%)

Query: 1   MDTLYHLIEQYGLILVFVNVLVEQLGAPVPAYPTLIITGALSASGRYSPALLLLLAVCAA 60
           M  L+ LI +YG+  VF NV + Q GAP+PA PTL++ GAL+A G      LL  A+  A
Sbjct: 1   MHDLFPLIAEYGVFAVFANVFLTQAGAPLPAVPTLLVAGALTADGALPWPELLPSALTGA 60

Query: 61  LMADYVWYLAGRRYGRQIMSRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASI 120
           L+ D +WYLAG+RYGR +M+ LCR+SLSPDSCVR+T + + RWGA  LL+AKF+PG +++
Sbjct: 61  LLGDGLWYLAGQRYGRHVMALLCRLSLSPDSCVRRTRTQFERWGAPMLLIAKFVPGLSTV 120

Query: 121 ASALSGTMGTRRLSFVLWDAAGSALWAGLGIFLGSLFSSAVDDLLNVLAELGHYGMLMIA 180
           +SAL GTM T   +F L+D  GSALWA   + LG     ++D LL  L +LG + ++++A
Sbjct: 121 SSALLGTMRTPFSTFALYDLLGSALWAAGWMLLGRGAHGSIDPLLTHLDQLGGHAVVLVA 180

Query: 181 VALAAFVANKWWQRRR 196
           + +A ++A +W QR R
Sbjct: 181 LLVAVYIAARWLQRWR 196


>PA1209_1 [S] COG0586 Uncharacterized membrane-associated protein Pae
           Pseudomonas aeruginosa
          Length = 204

 Score =  140 bits (353), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 86/171 (50%), Positives = 123/171 (71%), Gaps = 1/171 (0%)

Query: 23  EQLGAPVPAYPTLIITGALSASGRYSP-ALLLLLAVCAALMADYVWYLAGRRYGRQIMSR 81
           EQ G P+PAYP LI+ GAL+  G  +P  ++LL+ V A L+AD  WYLAGRRYG  ++  
Sbjct: 23  EQAGLPIPAYPALIVAGALAMQGVGAPLGVVLLVVVLACLLADVAWYLAGRRYGGFLLRS 82

Query: 82  LCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASIASALSGTMGTRRLSFVLWDAA 141
           +C++SLS DSC+RQ++++YLR G R+LL++KF+PG +++++ L+G   T    F+ +DAA
Sbjct: 83  ICKVSLSQDSCIRQSQNMYLRVGPRALLMSKFLPGASALSTTLAGMTRTHLRRFLAYDAA 142

Query: 142 GSALWAGLGIFLGSLFSSAVDDLLNVLAELGHYGMLMIAVALAAFVANKWW 192
           GSALWAG  + LG +FS AVD LL +L++    G L+IA A AAF+A K W
Sbjct: 143 GSALWAGSALLLGVIFSDAVDHLLALLSDYAAIGALLIAGAFAAFIAWKLW 193


>RSp0396_2 [P] COG0607 Rhodanese-related sulfurtransferase Rso Ralstonia
           solanacearum
          Length = 130

 Score =  116 bits (290), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 63/117 (53%), Positives = 77/117 (65%), Gaps = 12/117 (10%)

Query: 197 FRKSLAMARISVDELNTLLEAGNAPTIIDVRSPLSQ--QDGRIPGAVTISNQEIQTFVFD 254
           FRK L M RIS DEL+ L+E+G AP IIDVR+  S+  Q  RIPGA+            D
Sbjct: 1   FRKMLEMVRISPDELHALIESGEAPVIIDVRAGSSRMSQPHRIPGAMLY-----DMSAKD 55

Query: 255 GPVE-----GEVVVYCACPNEASAALVARQLMRRGYTRVRPLTGGIDAWRAAGYAID 306
           GP+E      E+V+YCACPNEASA ++AR LM RG+ RVRPL GGIDAW   GY ++
Sbjct: 56  GPIEIEGPDREIVIYCACPNEASAVMLARTLMGRGFRRVRPLHGGIDAWMDRGYGVE 112


>PA1209_2 [P] COG0607 Rhodanese-related sulfurtransferase Pae Pseudomonas
           aeruginosa
          Length = 107

 Score = 83.2 bits (204), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 44/102 (43%), Positives = 63/102 (61%), Gaps = 6/102 (5%)

Query: 203 MARISVDELNTLLEAGNAPTIIDVRSPLSQQDGRIPGAVTISNQEIQTFVFDGP---VEG 259
           + RISV+EL  L E G  P I+DVR+    +   IPGA+ +   E+   + D P    + 
Sbjct: 1   IPRISVEELENLREQGQLPVILDVRAHHEDEPSGIPGAIPV---ELNVSLKDLPGDLRDA 57

Query: 260 EVVVYCACPNEASAALVARQLMRRGYTRVRPLTGGIDAWRAA 301
            +V+YCACP+E SAA++A++L   G+TR   L GG+DAWR A
Sbjct: 58  SIVIYCACPHELSAAMLAQRLNASGFTRTWALAGGLDAWRKA 99


>NMB1689 [S] COG0586 Uncharacterized membrane-associated protein Nme
           Neisseria meningitidis MC58
          Length = 227

 Score = 67.4 bits (163), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 49/192 (25%), Positives = 98/192 (51%), Gaps = 10/192 (5%)

Query: 10  QYGLILVFVNVLVEQLGAPVPAYPTLIITGALSASGRYSPALLLLLAVCAALMADYVWYL 69
           +YG   VF  +++   G P+P   TL+  G +S  G  +P ++  + +   L+ D + + 
Sbjct: 11  EYGYAAVFFVLVICGFGVPIPEDLTLVTGGVISGMGYTNPHIMFAVGMLGVLVGDGIMFA 70

Query: 70  AGRRYGRQIM--SRLCRISLSPDSCVRQTESIYLRWGARSLLLAKFIPGFASIASALSGT 127
           AGR +G++I+    + RI ++P     Q +  + ++G   L +A+F+PG  +     +G 
Sbjct: 71  AGRIWGQKILRFKPIARI-MTPKRY-EQVQEKFDKYGNWVLFVARFLPGLRTAVFVTAGI 128

Query: 128 MGTRRLS---FVLWDAAGSALWAGLGIFLGSLFSSAVDDLLNVLAELGHYGMLMIAVALA 184
             +R++S   F++ D   + +   + I+LG   +  +D L+  +  L   G+ +I    A
Sbjct: 129 --SRKVSYLRFIIMDGLAALISVPIWIYLGEYGAHNIDWLMAKMHSL-QSGIFVILGIGA 185

Query: 185 AFVANKWWQRRR 196
             VA  WW++R+
Sbjct: 186 TVVAWIWWKKRQ 197