BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0954.p         (133 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

mlr6190 [L] COG3547 Transposase and inactivated derivatives Mlo ...    30   0.89 
BMEI1818 [L] COG1643 HrpA-like helicases Bme Brucella melitensis       30   1.9  
RSc3284 [H] COG0635 Coproporphyrinogen III oxidase and related F...    29   2.6  
MA4077_2 [S] COG0392 Predicted integral membrane protein Mac Met...    28   6.9  
TP0544 Non COG                                                         27   9.7  

>mlr6190 [L] COG3547 Transposase and inactivated derivatives Mlo
           Mesorhizobium loti
          Length = 381

 Score = 30.4 bits (67), Expect = 0.89,   Method: Compositional matrix adjust.
 Identities = 17/40 (42%), Positives = 19/40 (47%)

Query: 63  AMHSTGFGHITRVGAVHGEAAVSVAPPAIGTYLAPFSASF 102
           AM  T    +   GAVH EAAV   P A+   L PF A  
Sbjct: 29  AMDETAVCVVDDQGAVHLEAAVMTDPEALFAVLKPFLARL 68


>BMEI1818 [L] COG1643 HrpA-like helicases Bme Brucella melitensis
          Length = 710

 Score = 29.6 bits (65), Expect = 1.9,   Method: Composition-based stats.
 Identities = 17/35 (48%), Positives = 20/35 (57%), Gaps = 4/35 (11%)

Query: 79  HGEAAVSVAPPAIG-TYLAPFSASFGLGADWTGQG 112
           H  +A+ VAPP  G T L P      LGADW G+G
Sbjct: 114 HHASALLVAPPGAGKTTLVPLHM---LGADWRGEG 145


>RSc3284 [H] COG0635 Coproporphyrinogen III oxidase and related Fe-S
           oxidoreductases Rso Ralstonia solanacearum
          Length = 510

 Score = 28.9 bits (63), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 7/72 (9%)

Query: 52  HSPTFTAPATGAMHSTGFGHITRVGAVHGEAAVSV---APPAIGTYLAPFSASFGLGADW 108
           H P +T+  T     TGFG  T + A+H  AA++    AP ++  +L PF A+      +
Sbjct: 58  HGPRYTSYPTADRFHTGFGTDTYLDALHRRAAIAPALHAPLSLYVHL-PFCANLCY---Y 113

Query: 109 TGQGQFTVGTHT 120
            G  +     HT
Sbjct: 114 CGCNKVVTKDHT 125


>MA4077_2 [S] COG0392 Predicted integral membrane protein Mac Methanosarcina
           acetivorans str.C2A
          Length = 339

 Score = 27.7 bits (60), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 21/50 (42%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 86  VAPPAIGTYLAPFSASFGLGADWTGQGQFTVGT--HTYKCDVKMVDGAVA 133
           V P AIGTY    +A FGLG      G FTV    H  K  V ++ G +A
Sbjct: 269 VTPGAIGTYEVALTAVFGLGGIRPELG-FTVAVLDHIIKNSVTLLGGGIA 317


>TP0544 Non COG
          Length = 622

 Score = 27.3 bits (59), Expect = 9.7,   Method: Composition-based stats.
 Identities = 13/31 (41%), Positives = 17/31 (54%)

Query: 19 MTGAGSMTLAVTVNASTGALHGQAHGSILEG 49
          + G GS   A +V  S GA+ G+ H S  EG
Sbjct: 16 IVGTGSRCSAASVPHSIGAIQGEGHRSAYEG 46