BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0938.p (311 letters) Database: COGmodified 192,987 sequences; 59,019,183 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value RSc2708 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 332 5e-91 AGl412GM [K] COG0583 Transcriptional regulator Atu Agrobacterium... 227 3e-59 RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia sola... 161 2e-39 SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium... 156 5e-38 BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella mel... 148 2e-35 >RSc2708 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 374 Score = 332 bits (852), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 164/290 (56%), Positives = 220/290 (75%), Gaps = 5/290 (1%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M+ LDD+++ RALG + SLAAAARLLD+TPPA+TVR++R+E R+GV + R RG++ T+ Sbjct: 4 MVDLDDLRMFRALGVSRSLAAAARLLDVTPPALTVRMRRLEARLGVSLVVREPRGVSFTE 63 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EGQRL++EA +L+R+ES+ +VS G A VSG LR+VAPFGFGRRY+AP+VRDLH Sbjct: 64 EGQRLLREATALLDRLESLPQQVS-----GQAAGVSGHLRIVAPFGFGRRYIAPIVRDLH 118 Query: 121 RTHPNLVISLLLAESPLAVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRMS 180 R P L I L L+++PLA +GAD VI IG+ + SSW+GH LAPNER LCASPA + Sbjct: 119 RDAPKLAIMLHLSDNPLAEMSGADIVIHIGEARDSSWVGHPLAPNERVLCASPACLAGLP 178 Query: 181 RLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITRD 240 + HP+EL P LCLREND+DV+R RF+ + R + + VR+SGALSSNDGT+ D Sbjct: 179 PITHPAELAHLPCLCLRENDEDVTRWRFTDTTADSGRARQVVNVRVSGALSSNDGTVISD 238 Query: 241 WALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLT 290 WA DGLG + RSEW+ A L++ G+L R+LPGW L+PAP+MAL+P+R+G++ Sbjct: 239 WAADGLGVMVRSEWEAAPLLSAGTLVRLLPGWALKPAPVMALVPTRKGVS 288 >AGl412GM [K] COG0583 Transcriptional regulator Atu Agrobacterium tumefaciens strain C58 (Cereon) Length = 304 Score = 227 bits (578), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 130/311 (41%), Positives = 187/311 (60%), Gaps = 12/311 (3%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M+ D++ R + +A SLAAAAR LD+TP AVT RLQ++E R+GVR+ R +R + LT+ Sbjct: 1 MITSQDLEFFRIVSTAQSLAAAARALDVTPSAVTQRLQQLEQRLGVRLLERTSRRLHLTE 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 EGQ L Q ++IL +E +T ++ + V+G L+V APFGFGR Y+AP + L Sbjct: 61 EGQLLAQRGVEILTNMEEMTEQLLER-----RQVVTGHLQVAAPFGFGRLYIAPAMAQLR 115 Query: 121 RTHPNLVISLLLAESPLAVATGA-DAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 HP + ++L L E P+++ + A + +I +G + SS I H LAPN R LCA+P+ R Sbjct: 116 EQHPEVKLTLSLFEDPVSLRSDAWNVLIHVGPLTDSSLIVHRLAPNRRILCAAPSYLERH 175 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 P L ++ +RE+ DV+ RFS ++ LT+R+ A+SSNDG + + Sbjct: 176 GVPDRPETLNQHACAVIREDHADVTLWRFS------HQEKPPLTLRIQPAMSSNDGEVIK 229 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEA 299 WAL GLG + RSEWD A + G L +LP W L A ++ALL +R G R FL+ Sbjct: 230 QWALAGLGIIIRSEWDVAEDLRRGRLVALLPDWQLPDADVVALLDNRSGRVARTVCFLQI 289 Query: 300 AKRAFQPVPWR 310 K+ FQPVPWR Sbjct: 290 LKQQFQPVPWR 300 >RSp0997 [K] COG0583 Transcriptional regulator Rso Ralstonia solanacearum Length = 306 Score = 161 bits (407), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 106/307 (34%), Positives = 158/307 (51%), Gaps = 9/307 (2%) Query: 3 QLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTDEG 62 Q ++ AL +A SL+AAAR L +T PAV+ RL ++E RIG+ + R TR ++LT EG Sbjct: 7 QPAELGFFVALATAGSLSAAARNLGITTPAVSKRLAQMEARIGMPLVTRTTRRMSLTPEG 66 Query: 63 QRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLHRT 122 + ++ A IL I+ + ++ R G LRV A GFGRR++AP + + R Sbjct: 67 EVFLEHARRILGEIDDLDQLLTQAKGR-----PRGLLRVNATLGFGRRHIAPAISEYVRQ 121 Query: 123 HPNLVISLLLAESPLAVATGA-DAVISIGQVKGSSWIGHFLAPNERFLCASPALARRMSR 181 +P + + L L P + A D I G+ + I +APN R LCA+P RR Sbjct: 122 YPGVDVQLQLTADPPPLNEDAFDVCIRFGEPPDARIIARKVAPNRRLLCAAPDYLRRHGT 181 Query: 182 LKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITRDW 241 P++L + + +R+ D R + T RR TV + G L++NDG I +W Sbjct: 182 PLAPADLARHNCIGIRQGSDAYGVWRLTSGKGTKRR---TETVHVRGNLTTNDGEIAVNW 238 Query: 242 ALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLEPAPIMALLPSRQGLTTRQRVFLEAAK 301 AL+G G V R++WD + G L +VLP + A I A+ R L+ R R+F+E Sbjct: 239 ALEGHGIVMRAQWDVERYLRGGQLVQVLPLYATPEADIYAVYLQRHQLSPRIRLFVEFLA 298 Query: 302 RAFQPVP 308 F P Sbjct: 299 GRFSASP 305 >SMc00831 [K] COG0583 Transcriptional regulator Sme Sinorhizobium meliloti Length = 298 Score = 156 bits (395), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 104/312 (33%), Positives = 161/312 (51%), Gaps = 20/312 (6%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M L D+++ + S S++AA R L + ++ R++R+EDR+G R+ R TR I+LT+ Sbjct: 1 MTNLGDLEIFARVVSTGSMSAAGRALGFSAAVISKRIKRLEDRLGARLLQRTTRQISLTE 60 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 GQ + IL +E A S G + V GTLR+ AP FGR ++AP + Sbjct: 61 AGQGFYDRVLGILAGLEEAEAYAS-----GRSSQVQGTLRISAPTSFGRMHIAPHLTGFM 115 Query: 121 RTHPNLVISLLLAESPL-AVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 + HP+L + ++L + VA G D I IG++ SS + LAP R LCA+P+ + Sbjct: 116 KDHPDLKLHIVLTDDFTDIVAEGFDLAIRIGELSDSSLVARKLAPVRRLLCAAPSY---V 172 Query: 180 SRLKHPSELTEY-PYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTIT 238 +R P+E+ E ++CL +++D +L P S L+ R G L +N I Sbjct: 173 ARHGAPTEIGELAKHICLPAHNNDNWKLE-GPDGS--------LSYRPEGPLVTNSSEII 223 Query: 239 RDWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWH-LEPAPIMALLPSRQGLTTRQRVFL 297 R+ + G G RS WD + EG L +VLP W + A+ PSRQ L + R F+ Sbjct: 224 REAVIAGAGIALRSTWDIGRELREGRLVQVLPQWEGSHKLTLSAVYPSRQFLPAKVRQFI 283 Query: 298 EAAKRAFQPVPW 309 + + PVP+ Sbjct: 284 DYLAALYGPVPY 295 >BMEII1065 [K] COG0583 Transcriptional regulator Bme Brucella melitensis Length = 325 Score = 148 bits (373), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 100/311 (32%), Positives = 159/311 (51%), Gaps = 18/311 (5%) Query: 1 MLQLDDMQLLRALGSASSLAAAARLLDLTPPAVTVRLQRIEDRIGVRVANRATRGIALTD 60 M L DM++ + + S++AAAR L L+P V+ RL R+E+R+G R+ R TR IALT+ Sbjct: 21 MSSLADMEIFARVVATGSMSAAARDLGLSPAVVSKRLGRLEERLGTRLLQRTTRQIALTE 80 Query: 61 EGQRLVQEAMDILERIESITARVSHESDRGGQASVSGTLRVVAPFGFGRRYVAPLVRDLH 120 GQ + + IL IE A V+ S A GTL++ AP FGR ++AP + Sbjct: 81 AGQGYHERVLAILANIEEAEAFVARRS-----ADARGTLKISAPTTFGRMHIAPYLVPFM 135 Query: 121 RTHPNLVISLLLAESPL-AVATGADAVISIGQVKGSSWIGHFLAPNERFLCASPALARRM 179 R + +L +++ L++ + V G D I IG++ S+ + LAP R A+P + Sbjct: 136 RANADLTVNMQLSDEMVDIVGDGYDLAIRIGELSDSTLVARRLAPVRRIFVAAPRYLKER 195 Query: 180 SRLKHPSELTEYPYLCLRENDDDVSRLRFSPVDSTGRRQGKALTVRLSGALSSNDGTITR 239 + +L + ++CL +++D RL + +R +G L +N I R Sbjct: 196 GTPQTIEDLQD--HICLAPHNNDPWRLEGP---------KGPIVIRPTGPLQTNSSEIVR 244 Query: 240 DWALDGLGFVARSEWDCAHLVAEGSLKRVLPGWHLE-PAPIMALLPSRQGLTTRQRVFLE 298 + L GLG RS WD +A G L +VLP + I A+ PS+Q L + R+F++ Sbjct: 245 EAVLAGLGIAQRSTWDVGPELAAGKLVQVLPDYAASRNVAIHAVYPSKQFLPAKVRLFID 304 Query: 299 AAKRAFQPVPW 309 + PVP+ Sbjct: 305 YLADLYGPVPY 315