BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0936.p         (244 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

PA3425 [R] COG3450 Predicted enzyme of the cupin superfamily Pae...    47   3e-05
mll2946 Non COG                                                        44   3e-04
mlr8466 Non COG                                                        41   0.003
PA1917 [R] COG3450 Predicted enzyme of the cupin superfamily Pae...    39   0.013
TM1112 [R] COG3450 Predicted enzyme of the cupin superfamily Tma...    38   0.017

>PA3425 [R] COG3450 Predicted enzyme of the cupin superfamily Pae
           Pseudomonas aeruginosa
          Length = 114

 Score = 47.4 bits (111), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 2/95 (2%)

Query: 141 PKEILLGEVPTCRSDNVVDESSIHCKIGTWDSTPYHRIVRAHPVNEFMHILDGGVRFAES 200
           P  + LGE P  ++     E +   + G W+ TP  R  R     EF H L G   F   
Sbjct: 19  PVAVPLGE-PVAQTRAYAVERTDQVETGIWECTP-GRWRRQIVEQEFCHFLQGRCTFTPD 76

Query: 201 DGSVVAVDQGDAVFVPQGAAVGWESSQRVAKFYVV 235
            G  + ++ GDA+ +P+ +   W+  + V K YV+
Sbjct: 77  GGETIRIEAGDALLLPENSLGVWDVQETVRKSYVI 111


>mll2946 Non COG
          Length = 122

 Score = 44.3 bits (103), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 167 IGTWDSTPYHRIVRAHPVNEFMHILDGGVRFAESDGSVVAVDQGDAVFVPQGAAVGWESS 226
           IG W+ TP          +E  HI+ G V  + +DG    +  GD + +PQG    W   
Sbjct: 50  IGIWECTPGRFTADRTGSSEICHIISGRVEVSRADGEARELGPGDLLVLPQGWKGEWRIR 109

Query: 227 QRVAKFYVVQT 237
           +   K Y++Q+
Sbjct: 110 ETTRKLYMIQS 120


>mlr8466 Non COG
          Length = 114

 Score = 40.8 bits (94), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 33/97 (34%), Positives = 46/97 (47%), Gaps = 5/97 (5%)

Query: 141 PKEILLGEVPTCRSDNVVDESSIHCKIGTWDSTP-YHRIVRAHPVNEFMHILDGGVRFAE 199
           P  ++ G+ P  R+ NV +E       G W+STP   RIV  +   EF HIL G    AE
Sbjct: 21  PDRLISGD-PKFRTWNV-EERDGGLYAGIWESTPGKWRIV--YDEWEFCHILFGVSVIAE 76

Query: 200 SDGSVVAVDQGDAVFVPQGAAVGWESSQRVAKFYVVQ 236
            +G    V  GD+  +  G    WE  +   K YV++
Sbjct: 77  DEGEARTVKAGDSFVLRPGFKGSWEVLETTRKEYVIK 113


>PA1917 [R] COG3450 Predicted enzyme of the cupin superfamily Pae
           Pseudomonas aeruginosa
          Length = 115

 Score = 38.5 bits (88), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 21/68 (30%), Positives = 31/68 (45%), Gaps = 1/68 (1%)

Query: 168 GTWDSTPYHRIVRAHPVNEFMHILDGGVRFAESDGSVVAVDQGDAVFVPQGAAVGWESSQ 227
           G W+ TP  R  R     E+ +I+ G  RF   +G  V    GDA++        W+  Q
Sbjct: 47  GIWECTP-GRFRRQVEQAEYSYIVSGEGRFTPDEGQAVEFRAGDALYFAAATQGTWDIRQ 105

Query: 228 RVAKFYVV 235
            V K Y++
Sbjct: 106 TVRKTYLI 113


>TM1112 [R] COG3450 Predicted enzyme of the cupin superfamily Tma
           Thermotoga maritima
          Length = 89

 Score = 38.1 bits (87), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 26/52 (50%)

Query: 182 HPVNEFMHILDGGVRFAESDGSVVAVDQGDAVFVPQGAAVGWESSQRVAKFY 233
           +  NE  +IL+G V     DG    +++GD V  P+G    W+  + V K Y
Sbjct: 35  YDTNETCYILEGKVEVTTEDGKKYVIEKGDLVTFPKGLRCRWKVLEPVRKHY 86