BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.0883.p         (127 letters)

Database: COGmodified 
           192,987 sequences; 59,019,183 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AGc3371 [K] COG1396 Predicted transcriptional regulators Atu Agr...    50   2e-06
CAC3247 [K] COG1396 Predicted transcriptional regulators Cac Clo...    42   4e-04
dicA [K] COG1396 Predicted transcriptional regulators Eco Escher...    41   7e-04
CAC1867 [K] COG1396 Predicted transcriptional regulators Cac Clo...    38   0.006
AGc1081_1 [K] COG1396 Predicted transcriptional regulators Atu A...    38   0.006

>AGc3371 [K] COG1396 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 176

 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/67 (34%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 5  KLAIGQRIRLIRLKMGISQR-LFARALETAPNHICQIERGRCVPGSKLLHGMRAQFGIDL 63
          K  +G+R+R +R    I  R +FA  L  + + +   ERG  VP ++LL     +FG+++
Sbjct: 9  KTDLGRRLRAVRAAFDIDDRDVFASRLVISKSGLAHYERGERVPDAELLSAYHREFGVNI 68

Query: 64 NWLLSGQ 70
          +WL++GQ
Sbjct: 69 SWLVTGQ 75


>CAC3247 [K] COG1396 Predicted transcriptional regulators Cac Clostridium
          acetobutylicum
          Length = 243

 Score = 41.6 bits (96), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 33/56 (58%)

Query: 9  GQRIRLIRLKMGISQRLFARALETAPNHICQIERGRCVPGSKLLHGMRAQFGIDLN 64
          G++++ IR    +SQ+ FA+ L  A   I +IE GR V    L+H ++  +G D+N
Sbjct: 26 GEKVKKIREDAKLSQKQFAKKLGVAEKFINEIECGRKVVTESLIHRIKKLYGKDIN 81


>dicA [K] COG1396 Predicted transcriptional regulators Eco Escherichia
          coli K12
          Length = 135

 Score = 40.8 bits (94), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 33/69 (47%)

Query: 1  MNSDKLAIGQRIRLIRLKMGISQRLFARALETAPNHICQIERGRCVPGSKLLHGMRAQFG 60
          M +  L IG+RIR  R  +  +QR  A+AL+ +   + Q ERG   P  K L  +     
Sbjct: 1  METKNLTIGERIRYRRKNLKHTQRSLAKALKISHVSVSQWERGDSEPTGKNLFALSKVLQ 60

Query: 61 IDLNWLLSG 69
              W+L G
Sbjct: 61 CSPTWILFG 69


>CAC1867 [K] COG1396 Predicted transcriptional regulators Cac Clostridium
          acetobutylicum
          Length = 91

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 17/61 (27%), Positives = 32/61 (52%)

Query: 7  AIGQRIRLIRLKMGISQRLFARALETAPNHICQIERGRCVPGSKLLHGMRAQFGIDLNWL 66
           IG++I  +R+  G S+R FA+        +C+ E    +P  K L+ + + F I +++ 
Sbjct: 31 TIGEKIYKLRMLHGYSRREFAKVCSIGYTSVCKYELNYSLPHPKNLNKICSAFNISMSYF 90

Query: 67 L 67
          L
Sbjct: 91 L 91


>AGc1081_1 [K] COG1396 Predicted transcriptional regulators Atu
          Agrobacterium tumefaciens strain C58 (Cereon)
          Length = 127

 Score = 37.7 bits (86), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 23/72 (31%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 1  MNSDKLAIGQRIRLIRLKMGISQRLFARALETAPNHICQIERGRCVPGSKLLHGMRAQFG 60
          M+ +K+  G R+R IR  + ++Q   A AL  +P+++  IER +     +LL  + + + 
Sbjct: 1  MSENKIFAGPRVRRIRNGLALTQTAMAEALAISPSYLNLIERNQRPLTVQLLLKLASVYK 60

Query: 61 IDLNWLLSGQSA 72
          +DL+  L G+SA
Sbjct: 61 VDLDD-LQGESA 71